Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 3.1e-260 902.1 821 100.0
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.3e-137 493.4 548 65.3
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.6e-110 404.1 549 55.7
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 4.8e-104 383.3 554 54.2
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 7.0e-103 379.4 558 51.1
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 4.7e-91 340.1 555 53.3
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.3e-80 305.4 463 56.6
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.7e-78 297.7 333 61.9
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.6e-75 288.5 456 49.1
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 3.6e-75 287.3 218 75.7
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 6.4e-72 276.6 224 70.5
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 2.2e-64 251.5 207 67.6
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 9.2e-63 246.1 242 59.9
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.2e-62 245.7 233 63.9
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.6e-62 245.4 216 64.8
Medtr1g010090 Medicago truncatula HOM05D004041 ORTHO05D004564 1.0e-61 242.7 441 48.5
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 3.0e-61 241.1 202 65.3
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 3.9e-61 240.7 226 61.1
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.1e-60 239.2 232 59.1
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 5.6e-60 236.9 209 64.1
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 7.3e-60 236.5 233 59.7
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.8e-59 234.6 195 64.6
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 8.1e-59 233.0 203 62.6
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 8.1e-59 233.0 228 58.8
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.1e-58 232.6 228 58.8
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.4e-58 232.3 232 59.1
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.5e-57 228.8 230 57.0
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.4e-57 227.6 203 61.6
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 3.7e-56 224.2 225 58.7
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 8.3e-56 223.0 200 66.0
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.4e-55 221.5 209 61.7
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 4.1e-55 220.7 263 54.4
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 5.4e-55 220.3 234 55.6
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 2.1e-54 218.4 237 57.8
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.5e-54 217.6 212 59.4
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.5e-54 217.6 212 59.4
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 4.6e-54 217.2 212 59.4
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.6e-54 217.2 212 59.4
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.8e-54 216.5 235 54.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.8e-54 216.5 212 59.4
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 7.8e-54 216.5 203 61.6
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 2.3e-53 214.9 226 57.1
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 6.6e-53 213.4 219 56.6
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 2.5e-52 211.5 224 58.9
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 4.3e-52 210.7 154 75.3
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.2e-51 209.1 208 60.6
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.6e-51 208.8 150 74.0
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.6e-51 208.8 148 77.0
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.2e-51 206.8 209 60.3
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 6.2e-51 206.8 206 58.3
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-50 206.1 221 57.0
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.1e-50 206.1 221 57.9
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 5.2e-50 203.8 234 56.0
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 8.9e-50 203.0 237 53.6
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 8.9e-50 203.0 229 54.6
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.5e-49 202.2 231 56.7
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.5e-49 202.2 153 72.5
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.6e-49 201.4 234 52.1
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 9.9e-49 199.5 183 60.7
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.3e-48 199.1 222 54.5
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 2.2e-48 198.4 209 57.4
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 2.9e-48 198.0 203 56.7
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.9e-48 198.0 181 65.2
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 2.9e-48 198.0 238 52.9
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 6.4e-48 196.8 219 53.9
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 6.4e-48 196.8 219 53.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.4e-48 196.8 205 59.0
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 8.4e-48 196.4 215 55.3
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.4e-47 195.7 248 50.8
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.4e-47 195.7 248 50.8
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.4e-47 194.9 233 55.8
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.4e-47 194.9 221 55.2
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 3.2e-47 194.5 261 49.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 4.1e-47 194.1 224 55.4
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 7.1e-47 193.4 205 56.1
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.6e-46 192.2 144 70.1
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.1e-46 191.8 146 72.6
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.5e-46 191.0 152 69.7
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.3e-45 189.1 158 67.7
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.3e-45 189.1 144 69.4
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.6e-45 186.8 152 68.4
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 8.6e-45 186.4 144 70.1
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.5e-44 185.7 133 77.4
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 3.3e-44 184.5 240 49.6
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 4.3e-44 184.1 226 52.2
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 7.3e-44 183.3 223 52.9
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 9.6e-44 183.0 144 68.8
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.6e-43 182.2 188 55.9
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.1e-43 181.8 229 51.1
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 2.8e-43 181.4 147 67.3
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.6e-43 181.0 116 82.8
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 8.1e-43 179.9 147 66.0
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 4.0e-42 177.6 116 81.9
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.2e-41 176.0 203 57.6
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.2e-41 176.0 227 50.2
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 4.4e-41 174.1 565 38.6
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 9.9e-41 172.9 106 82.1
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 2.2e-40 171.8 143 65.0
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 6.4e-40 170.2 119 79.0
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.4e-40 169.9 107 82.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.4e-39 169.1 131 69.5
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 4.2e-39 167.5 120 72.5
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 9.3e-39 166.4 206 53.9
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 6.0e-38 163.7 212 49.1
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.0e-37 162.9 115 73.0
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.3e-37 162.5 156 57.1
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.7e-37 162.2 106 75.5
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.0e-37 161.4 106 77.4
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 3.9e-37 161.0 219 50.2
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.5e-36 159.1 150 56.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.9e-36 158.7 191 53.9
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 2.5e-36 158.3 150 58.7
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 3.3e-36 157.9 189 54.5
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.3e-36 156.8 132 67.4
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.8e-35 154.8 143 57.3
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 4.0e-34 151.0 143 55.2
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 9.0e-34 149.8 190 50.0
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.6e-33 148.3 103 78.6
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 7.1e-31 140.2 142 57.0
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 9.3e-31 139.8 90 71.1
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 3.5e-30 137.9 95 75.8
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 6.7e-29 133.7 115 67.8
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 6.7e-29 133.7 232 41.4
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 8.7e-29 133.3 80 78.8
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 8.7e-29 133.3 144 56.2
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 8.7e-29 133.3 144 56.2
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.5e-28 131.7 115 67.0
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 9.6e-28 129.8 143 57.3
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 4.8e-27 127.5 117 59.8
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 6.2e-27 127.1 118 58.5
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.9e-26 123.6 139 55.4
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.0e-25 122.1 249 37.8
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 4.2e-23 114.4 108 55.6
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 9.3e-23 113.2 105 57.1
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 2.1e-22 112.1 109 55.0
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.6e-22 110.9 121 51.2
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.0e-21 109.8 104 55.8
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.0e-21 109.8 105 54.3
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.3e-21 109.4 132 52.3
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.8e-21 109.0 102 52.9
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 3.0e-21 108.2 104 54.8
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 3.9e-21 107.8 100 56.0
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.5e-20 105.9 104 57.7
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.9e-20 105.5 110 56.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.5e-20 105.1 107 54.2
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.3e-20 104.4 139 49.6
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 7.4e-20 103.6 105 49.5
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 1.3e-19 102.8 121 55.4
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.3e-19 102.8 160 40.0
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.6e-19 102.4 149 44.3
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 4.8e-19 100.9 100 56.0
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 3.4e-17 94.7 52 82.7
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.9e-15 89.0 144 44.4
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.1e-14 85.5 59 76.3
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 2.1e-14 85.5 116 45.7
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.8e-13 82.4 81 59.3
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.8e-13 82.4 112 44.6
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 8.7e-13 80.1 105 41.0
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-12 79.7 62 77.4
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.6e-11 75.9 143 33.6
arahy.Tifrunner.gnm1.ann1.EPLR59 Arachis hypogaea HOM05D004041 ORTHO05D004564 1.1e-10 73.2 80 63.8
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.1e-10 71.2 72 56.9
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 6.9e-10 70.5 67 52.2
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 9.0e-10 70.1 65 58.5
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 7.9e-06 57.0 64 45.3


User provided reference genes

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