Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 3.9e-67 258.1 136 100.0
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 3.0e-27 125.6 105 68.6
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 3.0e-27 125.6 105 64.8
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 1.9e-26 122.9 107 62.6
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 9.7e-26 120.6 105 62.9
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 6.3e-25 117.9 105 61.9
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 6.3e-25 117.9 105 61.9
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 2.2e-22 109.4 104 60.6
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 1.4e-21 106.7 71 76.1
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 5.5e-21 104.8 75 69.3
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 2.4e-16 89.4 102 52.0
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 3.1e-16 89.0 80 56.2
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 9.1e-16 87.4 102 50.0
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 1.2e-15 87.0 76 57.9
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 2.0e-15 86.3 95 52.6
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 2.0e-15 86.3 102 46.1
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 2.0e-15 86.3 93 51.6
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 2.6e-15 85.9 93 50.5
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 2.6e-15 85.9 94 54.3
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 2.6e-15 85.9 103 48.5
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 1.0e-14 84.0 94 53.2
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 1.7e-14 83.2 88 52.3
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 5.0e-14 81.6 86 52.3
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 6.5e-14 81.3 103 46.6
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 4.2e-13 78.6 104 44.2
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 7.2e-13 77.8 62 59.7
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 9.4e-13 77.4 70 51.4
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 1.2e-12 77.0 71 53.5
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 1.2e-12 77.0 70 55.7
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 1.6e-12 76.6 96 52.1
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 1.6e-12 76.6 94 46.8
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 3.6e-12 75.5 71 50.7
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 3.6e-12 75.5 94 45.7
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 4.7e-12 75.1 70 50.0
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 4.7e-12 75.1 70 52.9
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 4.7e-12 75.1 94 45.7
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 7.9e-12 74.3 76 50.0
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 7.9e-12 74.3 94 45.7
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 1.0e-11 73.9 70 51.4
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 3.0e-11 72.4 72 48.6
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 3.9e-11 72.0 55 61.8
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 5.1e-11 71.6 71 46.5
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 5.1e-11 71.6 73 43.8
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 6.7e-11 71.2 89 46.1
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 1.1e-10 70.5 71 49.3
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 2.0e-10 69.7 65 60.0
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 2.6e-10 69.3 104 40.4
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 2.6e-10 69.3 72 45.8
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 2.6e-10 69.3 95 42.1
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 4.4e-10 68.6 57 61.4
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 4.4e-10 68.6 82 46.3
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 5.7e-10 68.2 68 50.0
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 7.4e-10 67.8 86 43.0
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 9.7e-10 67.4 61 52.5
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.7e-09 66.6 43 65.1
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 2.8e-09 65.9 63 52.4
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 2.8e-09 65.9 63 52.4
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 2.8e-09 65.9 40 70.0
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 3.7e-09 65.5 61 50.8
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 3.7e-09 65.5 61 50.8
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 8.2e-09 64.3 71 46.5
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 1.8e-08 63.2 75 44.0
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 1.8e-08 63.2 37 73.0
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 1.8e-08 63.2 107 38.3
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 2.4e-08 62.8 37 73.0
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 5.3e-08 61.6 37 67.6
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 5.3e-08 61.6 38 63.2
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 5.3e-08 61.6 52 50.0
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 7.0e-08 61.2 63 47.6
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 1.5e-07 60.1 35 71.4
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 1.5e-07 60.1 62 48.4
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 3.4e-07 58.9 37 64.9
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 5.9e-07 58.2 87 37.9
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 7.7e-07 57.8 37 64.9
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 1.0e-06 57.4 36 75.0
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 1.0e-06 57.4 62 46.8
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 1.0e-06 57.4 34 73.5
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 1.7e-06 56.6 49 51.0
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 2.9e-06 55.8 42 64.3
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 3.8e-06 55.5 69 40.6


User provided reference genes

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