Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.3e-145 519.6 253 100.0
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.6e-114 416.4 253 79.1
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.3e-112 408.7 253 78.3
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 4.3e-112 408.3 253 79.8
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 2.8e-111 405.6 255 78.0
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 6.9e-110 401.0 253 77.5
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.6e-109 399.1 247 79.8
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.1e-107 393.7 255 76.9
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-107 393.3 258 76.4
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.5e-107 391.3 247 78.1
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 2.6e-101 372.5 262 72.1
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 7.6e-101 370.9 257 72.8
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 9.0e-94 347.4 257 67.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 5.9e-93 344.7 261 68.6
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 7.6e-93 344.4 259 66.8
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 6.5e-92 341.3 252 69.0
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 8.5e-92 340.9 258 67.1
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.5e-91 339.3 251 67.7
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 2.5e-91 339.3 255 65.9
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.2e-91 339.0 259 66.0
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.2e-91 338.6 259 65.3
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.2e-90 337.0 251 66.9
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.1e-90 334.7 261 65.5
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.3e-89 333.6 256 66.8
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.0e-89 332.4 252 66.3
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 5.1e-89 331.6 256 67.6
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.1e-88 330.5 259 63.7
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.3e-88 328.6 259 63.3
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 7.4e-88 327.8 256 66.0
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 9.7e-88 327.4 257 65.4
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.1e-86 323.9 259 63.3
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.4e-86 323.6 245 66.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.4e-86 322.8 251 65.3
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 5.3e-86 321.6 259 64.1
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.1e-86 320.9 253 64.4
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.5e-85 318.5 255 65.5
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.9e-85 318.2 259 64.5
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 7.7e-85 317.8 256 65.6
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.7e-85 317.8 256 65.6
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.0e-84 317.4 256 66.0
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.9e-84 315.8 251 62.5
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 5.0e-84 315.1 261 62.5
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.4e-83 313.5 256 60.9
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.4e-83 313.5 180 80.6
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.9e-83 313.2 252 62.7
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.9e-83 313.2 246 64.6
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 7.2e-83 311.2 255 60.8
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 7.2e-83 311.2 188 77.1
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.2e-82 310.5 246 62.6
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.3e-81 306.2 253 63.2
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 5.1e-81 305.1 257 62.3
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 8.8e-81 304.3 245 62.9
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 1.1e-80 303.9 261 58.6
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 1.5e-80 303.5 256 60.9
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 2.0e-80 303.1 258 60.9
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.6e-80 302.8 257 62.3
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.3e-80 302.4 257 62.3
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 7.4e-80 301.2 244 62.3
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.7e-79 300.1 264 60.2
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.2e-79 299.7 268 56.7
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 2.2e-79 299.7 217 68.2
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 2.2e-79 299.7 256 59.8
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.8e-79 299.3 255 62.0
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.7e-79 298.9 250 60.8
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 6.3e-79 298.1 268 57.1
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 8.2e-79 297.7 253 60.1
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 8.2e-79 297.7 290 54.1
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 1.4e-78 297.0 258 58.5
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 1.4e-78 297.0 271 59.0
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.8e-78 296.6 265 58.5
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.8e-78 296.6 269 56.5
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.4e-78 296.2 261 59.8
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 3.1e-78 295.8 262 61.1
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 3.1e-78 295.8 261 62.1
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 5.3e-78 295.0 259 59.8
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.2e-77 293.9 260 59.2
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.5e-77 293.5 255 58.8
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 2.0e-77 293.1 258 60.1
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 2.0e-77 293.1 258 57.8
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 3.4e-77 292.4 264 56.4
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.4e-77 292.4 266 58.3
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 3.4e-77 292.4 255 59.2
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-76 290.8 255 58.4
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.0e-76 290.8 261 58.2
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.0e-76 290.8 265 59.2
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-76 290.4 261 57.9
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.3e-76 290.4 253 59.7
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 2.9e-76 289.3 252 59.9
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 3.8e-76 288.9 253 57.7
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 5.0e-76 288.5 252 59.5
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 5.0e-76 288.5 180 75.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 5.0e-76 288.5 180 75.0
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 8.5e-76 287.7 218 67.9
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 1.9e-75 286.6 254 59.4
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.5e-75 286.2 252 57.1
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 4.2e-75 285.4 246 58.9
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 5.5e-75 285.0 268 56.7
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 9.4e-75 284.3 263 58.6
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.2e-74 283.9 261 56.7
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.6e-74 283.5 259 57.9
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.6e-74 283.5 244 60.2
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.1e-74 283.1 175 74.9
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.7e-74 282.7 256 58.6
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 3.6e-74 282.3 218 67.0
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 4.7e-74 282.0 257 57.6
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.4e-73 280.4 182 70.3
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.4e-73 280.4 252 59.9
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.4e-73 280.4 252 59.9
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.8e-73 280.0 258 56.6
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 2.3e-73 279.6 254 57.5
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 2.3e-73 279.6 262 57.3
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.0e-73 279.3 248 58.1
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.0e-73 279.3 259 56.8
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 3.9e-73 278.9 248 59.3
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 3.9e-73 278.9 185 70.3
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 6.7e-73 278.1 175 74.3
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.3e-71 273.9 174 71.3
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.7e-71 272.3 176 71.6
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 5.3e-70 268.5 218 63.3
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 7.0e-70 268.1 248 58.1
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 3.5e-69 265.8 252 56.3
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 5.9e-69 265.0 244 57.0
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 7.7e-69 264.6 174 68.4
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.7e-69 264.6 150 80.7
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.5e-67 260.4 231 58.0
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 1.0e-65 254.2 252 54.8
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 5.2e-65 251.9 148 79.1
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 4.1e-62 242.3 179 64.2
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.5e-59 233.8 221 55.2
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.5e-59 233.8 149 74.5
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.5e-59 231.9 260 50.4
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.2e-58 230.7 257 51.0
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.7e-58 229.6 173 61.3
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.0e-56 223.4 253 50.2
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 7.5e-56 221.5 167 61.7
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-55 220.7 152 69.7
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 3.7e-55 219.2 110 90.9
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.2e-53 214.2 164 60.4
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.9e-53 211.8 147 63.9
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 5.0e-52 208.8 170 56.5
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 8.6e-52 208.0 169 57.4
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.5e-51 207.2 252 44.8
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 6.8e-49 198.4 258 46.5
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 9.2e-46 188.0 209 51.7
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.6e-44 181.8 255 45.1
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-42 176.8 142 66.9
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-34 149.4 83 83.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 4.0e-33 146.0 104 66.3
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.1e-30 136.0 100 64.0
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.6e-27 125.6 78 74.4
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 9.5e-27 124.8 213 31.9
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.6e-26 122.9 123 53.7
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.7e-26 122.5 82 61.0
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 3.1e-25 119.8 63 85.7
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.4e-22 110.2 142 41.5
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 7.1e-22 108.6 67 76.1
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 4.6e-21 105.9 78 64.1
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-20 104.4 86 60.5
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.4e-17 93.6 65 63.1
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 9.9e-16 88.2 48 79.2
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.1e-14 82.8 51 72.5
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.3e-12 77.0 51 68.6
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.3e-12 77.0 51 68.6
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.9e-12 76.3 39 82.1
arahy.Tifrunner.gnm1.ann1.KE27EQ Arachis hypogaea HOM05D004168 ORTHO05D004999 2.8e-10 70.1 70 50.0
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.8e-09 67.4 43 72.1
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 2.0e-08 63.9 101 42.6
arahy.Tifrunner.gnm1.ann1.T252JQ Arachis hypogaea HOM05D004168 ORTHO05D004999 3.4e-08 63.2 45 66.7
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 3.2e-06 56.6 35 68.6


User provided reference genes

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