Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 2.0e-89 332.4 168 100.0
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 4.5e-65 251.5 168 78.0
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 2.9e-64 248.8 192 70.3
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 1.2e-62 243.4 173 75.1
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 3.1e-58 228.8 173 73.4
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 2.9e-56 222.2 171 70.8
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 2.9e-56 222.2 145 80.0
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 1.2e-54 216.9 171 67.8
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 2.0e-52 209.5 136 79.4
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 1.1e-50 203.8 159 71.1
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 6.9e-50 201.1 167 65.9
arahy.Tifrunner.gnm1.ann1.B4TR6Y Arachis hypogaea HOM05D005992 ORTHO05D007476 2.8e-43 179.1 152 66.4
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 2.1e-38 162.9 168 55.4
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 4.7e-38 161.8 174 56.3
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 4.7e-38 161.8 174 56.3
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 8.0e-38 161.0 174 55.2
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 1.8e-37 159.8 164 54.3
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 5.2e-37 158.3 169 56.8
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 2.8e-35 152.5 159 55.3
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 1.8e-34 149.8 164 56.1
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 4.1e-34 148.7 172 51.7
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 5.3e-34 148.3 172 51.7
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 5.3e-34 148.3 159 52.8
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 1.2e-33 147.1 164 51.2
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 2.0e-33 146.4 158 55.1
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.7e-33 146.0 157 51.6
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.7e-33 146.0 172 51.2
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 2.7e-33 146.0 182 51.6
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 4.5e-33 145.2 169 53.3
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 5.9e-33 144.8 169 53.3
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 1.0e-32 144.1 173 53.2
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 1.0e-32 144.1 171 51.5
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 3.8e-32 142.1 156 55.8
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 3.8e-32 142.1 169 52.7
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 8.5e-32 141.0 154 57.8
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 1.2e-30 137.1 167 51.5
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.2e-30 137.1 152 52.0
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 2.1e-30 136.3 165 50.9
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 3.6e-30 135.6 169 50.9
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 8.0e-30 134.4 170 50.0
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 1.5e-28 130.2 168 50.6
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 1.5e-28 130.2 169 49.1
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 2.0e-28 129.8 152 52.0
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 4.4e-28 128.6 152 50.0
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 5.7e-28 128.3 152 49.3
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 7.5e-28 127.9 154 51.9
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 9.8e-28 127.5 157 47.8
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 9.8e-28 127.5 152 51.3
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 1.7e-27 126.7 170 50.6
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 2.2e-27 126.3 158 50.0
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 2.8e-27 125.9 170 48.2
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 1.4e-26 123.6 151 48.3
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 1.8e-26 123.2 170 44.7
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 2.4e-26 122.9 155 50.3
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 2.4e-26 122.9 171 48.0
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 3.1e-26 122.5 175 45.1
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 3.1e-26 122.5 171 48.0
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 5.4e-26 121.7 153 47.7
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 3.5e-25 119.0 157 50.3
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 4.5e-25 118.6 156 46.8
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 5.9e-25 118.2 170 47.6
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 7.7e-25 117.9 206 41.7
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.3e-24 117.1 158 48.1
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 1.3e-24 117.1 159 44.7
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 2.9e-24 115.9 167 43.1
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 3.8e-24 115.5 165 47.3
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 6.5e-24 114.8 118 51.7
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 1.5e-23 113.6 152 44.1
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.9e-23 113.2 121 53.7
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 2.5e-23 112.8 151 47.7
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 9.4e-23 110.9 165 42.4
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 9.4e-23 110.9 153 44.4
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 1.0e-21 107.5 216 38.0
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 8.8e-21 104.4 183 39.3
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 2.0e-20 103.2 153 42.5
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 2.0e-20 103.2 139 46.0
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 2.6e-20 102.8 167 40.7
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 3.4e-20 102.4 223 37.2
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 4.4e-20 102.1 144 43.8
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 5.7e-20 101.7 98 57.1
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.7e-19 100.1 159 44.0
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 2.2e-19 99.8 128 46.1
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 2.8e-19 99.4 164 43.9
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 3.7e-19 99.0 141 45.4
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 1.1e-18 97.4 164 43.9
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 1.8e-18 96.7 115 50.4
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 3.1e-18 95.9 153 43.8
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.2e-17 94.0 123 49.6
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 2.7e-17 92.8 149 45.0
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 3.5e-17 92.4 213 33.3
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 2.9e-16 89.4 134 47.8
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.2e-14 84.0 137 38.0
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 8.0e-14 81.3 145 40.0
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 4.0e-13 79.0 162 35.2
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 1.5e-12 77.0 151 38.4
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 2.0e-12 76.6 102 44.1
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 4.4e-12 75.5 119 42.9
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 4.4e-12 75.5 151 35.1
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 5.7e-12 75.1 95 46.3
Hma1.2p1_1756F.1_g301045 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.3e-11 73.9 89 56.2
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 1.7e-11 73.6 146 39.0
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 2.2e-11 73.2 119 42.9
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 2.9e-11 72.8 80 53.8
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 3.2e-10 69.3 151 33.8
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 7.0e-10 68.2 100 40.0
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 2.0e-09 66.6 151 33.1
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 2.0e-09 66.6 151 33.1
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 2.0e-09 66.6 85 45.9
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 4.6e-09 65.5 158 32.9
PGSC0003DMG400020300 Solanum tuberosum HOM05D005992 ORTHO05D007476 5.0e-08 62.0 83 48.2
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 6.6e-08 61.6 111 39.6
Gorai.009G395900 Gossypium raimondii HOM05D005992 ORTHO05D007476 9.5e-07 57.8 52 55.8
CDE06G0073 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 6.2e-06 55.1 74 45.9


User provided reference genes

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