Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 2.6e-152 542.0 260 100.0
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 5.6e-91 338.2 212 78.3
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 1.6e-90 336.7 214 77.1
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 8.1e-90 334.3 210 77.1
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 2.4e-89 332.8 210 76.7
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 5.3e-89 331.6 218 74.3
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 9.9e-88 327.4 216 74.1
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 2.2e-87 326.2 216 74.5
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 5.5e-86 321.6 216 71.8
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 3.7e-82 308.9 178 81.5
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 4.8e-82 308.5 226 70.4
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 1.2e-80 303.9 198 73.2
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 4.5e-80 302.0 180 74.4
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.7e-77 292.7 172 76.7
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 4.6e-77 292.0 177 71.8
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 1.3e-76 290.4 166 77.7
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 1.3e-76 290.4 174 75.3
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 1.8e-76 290.0 172 74.4
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 2.3e-76 289.7 206 67.5
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 3.0e-76 289.3 181 72.9
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 3.0e-76 289.3 176 72.7
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 3.9e-76 288.9 185 71.9
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 3.9e-76 288.9 169 74.6
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 3.9e-76 288.9 178 70.8
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 5.1e-76 288.5 177 72.3
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 8.7e-76 287.7 179 70.9
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 1.1e-75 287.3 196 67.3
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 1.5e-75 287.0 206 66.5
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 1.9e-75 286.6 175 73.1
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 5.7e-75 285.0 178 71.9
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 5.7e-75 285.0 178 74.2
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 9.7e-75 284.3 164 74.4
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 9.7e-75 284.3 166 75.3
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 1.3e-74 283.9 194 66.5
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 2.1e-74 283.1 165 77.0
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 2.1e-74 283.1 162 76.5
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 3.7e-74 282.3 179 71.5
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 3.7e-74 282.3 166 75.3
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 6.3e-74 281.6 213 62.0
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 8.2e-74 281.2 194 68.0
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.1e-73 280.8 173 73.4
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.1e-73 280.8 173 73.4
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.1e-73 280.8 209 64.6
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 1.1e-73 280.8 173 72.3
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 1.8e-73 280.0 183 69.9
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 1.8e-73 280.0 188 66.5
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 2.4e-73 279.6 172 72.1
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 2.4e-73 279.6 181 71.3
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 3.1e-73 279.3 193 67.4
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 4.1e-73 278.9 217 62.7
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 4.1e-73 278.9 188 67.0
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 5.3e-73 278.5 200 65.0
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 5.3e-73 278.5 209 64.1
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 2.6e-72 276.2 193 65.8
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 3.4e-72 275.8 183 68.3
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 4.5e-72 275.4 219 59.4
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 4.5e-72 275.4 215 59.5
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 1.7e-71 273.5 206 63.6
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 3.8e-71 272.3 164 72.0
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 3.8e-71 272.3 186 65.6
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 5.0e-71 271.9 162 73.5
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 6.5e-71 271.6 163 73.0
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 8.5e-71 271.2 211 59.2
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 1.1e-70 270.8 200 62.5
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 1.4e-70 270.4 178 68.5
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.5e-70 269.6 172 72.1
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 2.5e-70 269.6 163 72.4
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 4.2e-70 268.9 196 64.3
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 4.2e-70 268.9 193 64.8
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 5.5e-70 268.5 168 70.2
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 7.2e-70 268.1 168 70.2
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.2e-69 267.3 178 66.3
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.2e-69 267.3 162 71.0
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 1.6e-69 266.9 237 55.3
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 1.6e-69 266.9 190 62.1
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.1e-69 266.5 166 71.7
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 3.6e-69 265.8 180 67.8
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 4.6e-69 265.4 166 71.7
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 4.6e-69 265.4 215 58.1
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 3.9e-68 262.3 179 65.9
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 5.1e-68 261.9 186 63.4
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 4.3e-67 258.8 187 63.6
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 2.8e-66 256.1 163 66.3
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 4.2e-62 242.3 209 60.8
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 7.2e-62 241.5 171 63.7
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 1.2e-61 240.7 188 63.3
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 1.6e-61 240.4 133 79.7
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 3.6e-61 239.2 143 76.2
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.2e-58 229.9 199 57.3
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 1.8e-57 226.9 179 56.4
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 9.1e-57 224.6 167 58.1
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 3.4e-56 222.6 185 60.0
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 4.5e-56 222.2 162 61.1
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 1.4e-54 217.2 134 70.9
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 3.6e-53 212.6 158 60.8
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 4.4e-51 205.7 159 58.5
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 1.7e-50 203.8 140 69.3
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 1.0e-47 194.5 136 65.4
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 3.3e-43 179.5 145 61.4
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 6.3e-42 175.3 168 51.2
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 4.1e-33 146.0 164 42.7
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 4.1e-33 146.0 87 70.1
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 1.3e-31 141.0 184 42.4
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 3.8e-31 139.4 149 48.3
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 5.5e-30 135.6 79 75.9
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 4.3e-22 109.4 60 80.0
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 3.7e-18 96.3 54 75.9
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 4.9e-18 95.9 54 79.6
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.2e-16 91.3 54 72.2
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 1.6e-16 90.9 53 69.8
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 7.8e-16 88.6 53 67.9
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 1.6e-13 80.9 92 48.9
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 6.2e-13 79.0 91 48.4
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 6.2e-13 79.0 91 48.4
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 6.2e-13 79.0 91 48.4
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 6.2e-13 79.0 91 48.4
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.6e-08 64.3 40 65.0
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 4.6e-08 62.8 34 79.4
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 1.9e-06 57.4 31 74.2
Cpa.g.sc32.161 Carica papaya HOM05D006824 ORTHO05D008779 4.3e-06 56.2 32 68.8


User provided reference genes

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