Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 1.4e-75 286.2 143 100.0
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 4.4e-45 184.9 145 71.7
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 1.2e-42 176.8 143 69.2
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 1.0e-38 163.7 142 62.0
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 4.0e-38 161.8 143 62.2
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 5.7e-37 157.9 146 61.6
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 5.7e-37 157.9 146 61.6
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.2e-34 150.2 146 60.3
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 2.5e-32 142.5 143 57.3
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 5.6e-32 141.4 145 58.6
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 4.0e-30 135.2 144 59.0
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 5.2e-30 134.8 144 54.2
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 8.9e-30 134.0 154 56.5
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 8.9e-30 134.0 154 56.5
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 8.9e-30 134.0 143 60.1
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 4.4e-29 131.7 143 59.4
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 5.8e-29 131.3 149 55.7
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 1.3e-28 130.2 136 58.8
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 6.4e-28 127.9 136 57.4
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 1.1e-27 127.1 136 57.4
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 3.2e-27 125.6 140 58.6
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 3.2e-27 125.6 147 51.7
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 4.1e-27 125.2 144 52.1
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 4.6e-26 121.7 143 52.4
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.1e-24 117.1 146 49.3
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 5.6e-24 114.8 137 54.0
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 9.5e-24 114.0 146 50.7
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 1.2e-23 113.6 137 48.2
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 1.6e-23 113.2 137 53.3
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 1.4e-22 110.2 129 54.3
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 1.8e-22 109.8 132 52.3
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 6.8e-22 107.8 142 47.9
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.4e-21 105.5 137 49.6
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.4e-21 105.5 130 47.7
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 4.4e-21 105.1 131 48.1
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 7.5e-21 104.4 130 46.9
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.3e-20 103.6 140 45.7
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.7e-20 103.2 129 47.3
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 2.2e-20 102.8 140 46.4
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 2.9e-20 102.4 145 46.2
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 4.1e-19 98.6 136 46.3
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 7.0e-19 97.8 136 50.0
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 9.2e-19 97.4 144 46.5
Lj1g0018189 Lotus japonicus HOM05D004062 ORTHO05D004417 9.2e-19 97.4 144 49.3
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 9.2e-19 97.4 131 44.3
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 1.6e-18 96.7 136 49.3
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 6.0e-18 94.7 144 42.4
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 7.8e-18 94.4 137 42.3
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.7e-17 93.2 135 43.7
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 2.3e-17 92.8 137 42.3
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 3.0e-17 92.4 140 43.6
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 3.9e-17 92.0 144 41.0
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.0e-17 91.7 140 44.3
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 5.0e-17 91.7 141 43.3
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 5.0e-17 91.7 141 43.3
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 8.6e-17 90.9 138 41.3
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 1.5e-16 90.1 145 40.0
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 1.5e-16 90.1 145 44.1
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 1.9e-16 89.7 134 43.3
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.2e-15 84.7 141 42.6
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 6.2e-15 84.7 139 39.6
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 8.1e-15 84.3 137 39.4
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 1.4e-14 83.6 142 37.3
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.8e-14 83.2 141 40.4
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 3.1e-14 82.4 133 39.8
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.0e-14 82.0 135 42.2
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 8.9e-14 80.9 138 38.4
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.2e-13 80.5 130 43.1
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.5e-13 80.1 134 38.8
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.5e-13 80.1 149 36.9
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.5e-13 80.1 138 38.4
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.5e-13 80.1 138 38.4
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.0e-13 79.7 140 40.7
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.6e-13 79.3 133 36.1
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 3.4e-13 79.0 140 40.7
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 7.5e-13 77.8 141 39.7
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.9e-13 77.4 144 36.1
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.3e-12 77.0 135 37.8
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 1.3e-12 77.0 150 37.3
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.2e-12 76.3 133 36.8
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 3.7e-12 75.5 140 38.6
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 8.3e-12 74.3 136 39.0
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.1e-11 73.9 94 45.7
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 1.9e-11 73.2 141 36.9
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.9e-11 73.2 134 36.6
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.4e-11 72.8 139 37.4
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 2.4e-11 72.8 143 36.4
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 3.2e-11 72.4 121 37.2
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 3.2e-11 72.4 127 40.9
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 4.1e-11 72.0 136 39.0
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 4.1e-11 72.0 141 34.8
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 5.4e-11 71.6 109 45.0
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 5.4e-11 71.6 109 45.0
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-10 70.5 120 39.2
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-10 70.5 120 39.2
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.2e-10 70.5 129 37.2
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.6e-10 70.1 133 38.3
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 2.7e-10 69.3 140 36.4
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 2.7e-10 69.3 127 37.0
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 2.7e-10 69.3 102 39.2
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.6e-10 68.6 142 35.2
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.6e-10 68.6 140 35.7
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 4.6e-10 68.6 133 34.6
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.3e-09 67.0 142 34.5
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-09 67.0 142 34.5
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-09 67.0 142 34.5
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 1.3e-09 67.0 131 33.6
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 1.7e-09 66.6 131 34.4
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.7e-09 66.6 142 34.5
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 3.0e-09 65.9 121 34.7
Medtr3g100640 Medicago truncatula HOM05D004062 ORTHO05D004417 3.9e-09 65.5 70 50.0
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 3.9e-09 65.5 132 34.1
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.1e-09 65.1 134 32.8
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.1e-09 65.1 148 31.8
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 6.6e-09 64.7 107 38.3
Actinidia21017 Actinidia chinensis HOM05D001306 ORTHO05D001159 1.1e-08 63.9 93 43.0
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 1.5e-08 63.5 116 37.1
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 1.5e-08 63.5 116 37.1
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 1.5e-08 63.5 136 35.3
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 1.5e-08 63.5 130 40.8
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.9e-08 63.2 134 32.8
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 2.5e-08 62.8 143 34.3
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 2.5e-08 62.8 107 36.4
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 2.5e-08 62.8 120 35.8
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.3e-08 62.4 146 33.6
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 3.3e-08 62.4 105 39.0
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 3.3e-08 62.4 125 35.2
Actinidia25830 Actinidia chinensis HOM05D001306 ORTHO05D001159 5.6e-08 61.6 93 41.9
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 5.6e-08 61.6 128 35.2
Nn4g25678 Nelumbo nucifera HOM05D003529 ORTHO05D004106 7.3e-08 61.2 133 33.8
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.2e-07 60.5 131 33.6
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-07 60.5 128 35.9
Carub.0005s2931 Capsella rubella HOM05D003529 ORTHO05D004106 1.6e-07 60.1 121 34.7
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 1.6e-07 60.1 143 32.9
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 1.6e-07 60.1 146 33.6
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.1e-07 59.7 94 43.6
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 2.1e-07 59.7 148 32.4
Sp4g29420 Schrenkiella parvula HOM05D003529 ORTHO05D004106 2.8e-07 59.3 121 38.0
Sc17g0003040 Simmondsia chinensis HOM05D003529 ORTHO05D004106 2.8e-07 59.3 127 33.9
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.7e-07 58.5 147 32.7
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.7e-07 58.5 144 31.2
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 4.7e-07 58.5 129 32.6
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 4.7e-07 58.5 129 32.6
AT2G47485 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 6.2e-07 58.2 121 38.8
CARHR142880 Cardamine hirsuta HOM05D003529 ORTHO05D004106 6.2e-07 58.2 123 40.7
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 6.2e-07 58.2 141 36.9
TAR633G2691 Trochodendron aralioides HOM05D003529 ORTHO05D004106 6.2e-07 58.2 127 33.1
AL4G47050 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 8.1e-07 57.8 121 38.0
BolC4t21684H Brassica oleracea HOM05D003529 ORTHO05D004106 8.1e-07 57.8 122 36.1
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 8.1e-07 57.8 147 32.0
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 1.1e-06 57.4 123 36.6
Thhalv10001673m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 1.1e-06 57.4 133 38.3
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 1.1e-06 57.4 147 32.0
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-06 57.4 147 32.0
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.1e-06 57.4 147 32.0
Aa31LG10G16460 Aethionema arabicum HOM05D003529 ORTHO05D004106 1.4e-06 57.0 126 35.7
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 1.4e-06 57.0 128 30.5
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 1.4e-06 57.0 133 33.1
C04p00390 Brassica napus HOM05D003529 ORTHO05D004106 1.8e-06 56.6 122 36.1
CARHR172920 Cardamine hirsuta HOM05D003529 ORTHO05D004106 1.8e-06 56.6 119 31.1
HanXRQChr10g0285441 Helianthus annuus HOM05D003529 ORTHO05D004106 1.8e-06 56.6 123 34.1
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.4e-06 56.2 146 31.5
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.4e-06 56.2 141 33.3
TAR636G2223 Trochodendron aralioides HOM05D003529 ORTHO05D004106 3.1e-06 55.8 136 32.4
CiPaw.07G113900 Carya illinoinensis HOM05D003529 ORTHO05D004106 4.0e-06 55.5 135 29.6
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.0e-06 55.5 151 31.8
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 4.0e-06 55.5 128 28.1
BcaB02g08767 Brassica carinata HOM05D003529 ORTHO05D004106 5.2e-06 55.1 123 33.3
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 6.8e-06 54.7 144 29.9
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 8.9e-06 54.3 132 33.3


User provided reference genes

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