Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 4.6e-231 804.3 428 100.0
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 9.7e-165 583.9 349 87.1
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.0e-161 573.9 349 86.0
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.1e-160 570.5 353 84.7
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 4.2e-160 568.5 350 84.3
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 5.5e-160 568.2 354 84.7
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.1e-159 566.2 349 86.0
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 2.7e-159 565.8 349 84.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 4.1e-155 552.0 353 82.4
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 9.1e-155 550.8 349 79.9
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.9e-153 545.8 349 79.7
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 2.9e-153 545.8 349 79.4
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 3.8e-153 545.4 354 82.5
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.9e-152 543.1 347 79.8
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 5.2e-150 535.0 351 81.5
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.3e-148 530.4 349 77.9
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.4e-147 526.9 349 77.7
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 5.0e-145 518.5 349 77.1
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 5.0e-145 518.5 349 76.2
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 2.5e-144 516.2 349 76.5
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 3.2e-144 515.8 349 75.9
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 4.2e-144 515.4 355 74.6
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 7.2e-144 514.6 349 74.2
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.2e-143 513.8 349 75.9
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 2.7e-143 512.7 349 74.8
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.0e-142 510.8 349 75.9
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.4e-142 510.4 349 75.4
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-142 510.0 349 74.2
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 2.3e-142 509.6 349 74.5
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 4.0e-142 508.8 352 75.3
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 4.0e-142 508.8 349 73.9
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 8.8e-142 507.7 364 73.4
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 2.0e-141 506.5 349 74.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.6e-141 506.1 349 75.1
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 2.6e-141 506.1 349 73.4
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 5.7e-141 505.0 349 73.6
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 3.7e-140 502.3 352 74.4
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.8e-140 501.9 349 74.5
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 8.3e-140 501.1 349 72.8
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.1e-139 500.7 349 72.5
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.1e-139 500.7 349 72.8
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.4e-139 499.6 352 72.4
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.1e-139 499.2 361 71.2
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 4.1e-139 498.8 347 72.6
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 3.5e-138 495.7 352 71.9
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 7.7e-138 494.6 349 73.4
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.3e-137 493.8 347 72.3
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.7e-137 493.4 352 73.0
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 3.8e-137 492.3 349 73.1
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 3.8e-137 492.3 349 71.6
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 8.6e-137 491.1 349 73.1
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.5e-136 490.3 347 72.6
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.5e-136 490.3 362 71.8
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.5e-136 487.6 352 71.6
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.2e-135 487.3 350 72.0
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.8e-135 486.1 336 75.0
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.7e-135 485.3 336 75.6
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 8.0e-135 484.6 351 72.6
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 3.0e-134 482.6 350 72.6
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 3.0e-134 482.6 367 68.9
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.0e-134 482.3 350 72.0
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 5.2e-134 481.9 353 71.1
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.2e-133 480.7 299 83.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-133 480.3 347 70.6
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-133 480.3 347 70.6
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.5e-133 480.3 350 71.7
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.0e-133 479.9 349 70.5
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 2.6e-133 479.6 349 70.8
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.4e-133 479.2 349 70.5
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.7e-132 476.9 349 70.5
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 4.9e-132 475.3 346 71.4
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.7e-130 469.5 368 68.5
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.5e-130 468.8 368 68.8
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 4.5e-130 468.8 349 70.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 5.9e-130 468.4 349 70.2
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.0e-129 467.6 349 69.1
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.3e-129 466.5 349 68.8
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.3e-129 466.5 368 68.8
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.9e-129 465.7 368 68.8
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.5e-128 463.0 381 65.6
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 2.5e-128 463.0 353 70.0
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 2.3e-126 456.4 349 66.5
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 4.0e-126 455.7 347 66.9
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 4.0e-126 455.7 355 67.9
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 2.0e-125 453.4 350 69.7
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 5.8e-125 451.8 351 68.9
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 9.8e-125 451.1 352 68.8
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 2.2e-124 449.9 352 67.6
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 4.9e-124 448.7 353 68.3
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 6.4e-124 448.4 347 69.2
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 1.4e-123 447.2 351 67.8
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.4e-123 447.2 352 69.0
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.2e-122 444.1 351 67.2
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 3.5e-122 442.6 351 67.2
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 4.6e-122 442.2 352 68.5
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 6.0e-122 441.8 349 68.2
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 6.0e-122 441.8 352 67.6
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 1.3e-121 440.7 352 67.0
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 1.3e-121 440.7 352 67.0
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.3e-121 439.9 349 65.9
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.3e-121 439.9 349 65.3
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 3.0e-121 439.5 352 67.0
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 3.0e-121 439.5 349 65.3
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.5e-120 437.2 349 67.6
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.9e-120 436.8 349 67.9
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.2e-119 434.1 364 65.4
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.6e-119 433.7 346 63.9
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 9.8e-117 424.5 314 70.1
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 9.8e-117 424.5 349 66.2
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 4.6e-114 415.6 349 63.9
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 3.0e-113 412.9 353 62.6
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.2e-109 401.0 357 60.8
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 1.3e-108 397.5 355 59.7
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 3.7e-108 396.0 352 63.1
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 3.7e-108 396.0 353 59.5
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 6.4e-108 395.2 355 59.7
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 3.2e-107 392.9 351 61.5
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 6.6e-105 385.2 368 57.9
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.4e-102 376.7 349 58.7
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 8.9e-102 374.8 338 59.8
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 2.1e-98 363.6 358 55.6
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.6e-95 352.8 338 58.0
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 9.0e-94 348.2 270 66.3
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.0e-89 334.7 267 62.9
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 5.4e-83 312.4 380 47.1
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 3.3e-80 303.1 303 58.1
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.7e-79 299.7 399 46.6
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 3.7e-79 299.7 401 44.6
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.8e-78 297.4 265 58.9
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.2e-77 294.7 226 67.3
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.3e-65 253.8 352 44.0
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.0e-53 214.2 435 36.8
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.6e-50 204.5 138 74.6
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.5e-43 181.4 136 69.1
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.5e-43 180.6 210 48.1
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.0e-41 175.3 111 82.0
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.0e-36 158.7 172 54.1
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.4e-30 137.5 358 31.3
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.1e-27 128.6 147 52.4
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 8.0e-26 122.5 165 44.2
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 4.0e-25 120.2 93 69.9
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 1.5e-24 118.2 153 47.7
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 4.1e-22 110.2 136 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 4.5e-21 106.7 168 45.2
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-20 105.1 120 52.5
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 4.2e-19 100.1 83 60.2
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-18 98.2 85 57.6
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 2.3e-17 94.4 99 52.5
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 6.8e-17 92.8 82 57.3
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 2.9e-15 87.4 125 45.6
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.7e-15 87.0 125 46.4
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.4e-14 85.1 54 81.5
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 2.9e-12 77.4 105 44.8
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.0e-12 76.6 39 92.3
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 5.0e-12 76.6 123 42.3
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 5.0e-12 76.6 82 50.0
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 8.6e-12 75.9 99 54.5
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.6e-10 71.6 50 76.0
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 3.6e-10 70.5 93 46.2
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 4.7e-10 70.1 52 59.6
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 1.8e-09 68.2 45 77.8
Medtr2g030260 Medicago truncatula HOM05D004239 ORTHO05D005191 1.2e-08 65.5 45 73.3
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 1.2e-08 65.5 51 56.9
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 8.3e-07 59.3 36 77.8
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 7.0e-06 56.2 37 75.7


User provided reference genes

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