Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.9e-41 171.4 84 100.0
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 9.8e-29 129.8 97 69.1
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 6.4e-28 127.1 97 68.0
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.4e-27 125.9 93 67.7
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 5.4e-27 124.0 88 67.0
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 5.4e-27 124.0 86 74.4
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 4.6e-26 120.9 93 65.6
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 4.6e-26 120.9 93 63.4
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.7e-25 119.0 88 65.9
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.7e-25 119.0 89 65.2
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 8.6e-25 116.7 92 62.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.1e-23 112.1 95 58.9
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 6.2e-23 110.5 91 60.4
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 6.2e-23 110.5 91 60.4
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.1e-22 109.8 86 59.3
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.3e-22 108.6 94 58.5
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 6.8e-22 107.1 84 57.1
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 6.8e-22 107.1 89 58.4
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 8.9e-22 106.7 95 54.7
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.5e-21 105.9 92 59.8
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 2.6e-21 105.1 94 54.3
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 2.6e-21 105.1 89 56.2
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 3.4e-21 104.8 88 55.7
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 5.8e-21 104.0 96 55.2
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 7.5e-21 103.6 96 51.0
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.9e-21 103.2 95 55.8
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.9e-21 103.2 95 55.8
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 9.9e-21 103.2 95 55.8
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.3e-20 102.8 91 57.1
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.3e-20 102.8 91 57.1
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.7e-20 102.4 94 58.5
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.7e-20 102.4 94 58.5
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.2e-20 102.1 94 53.2
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.9e-20 101.7 88 59.1
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 2.9e-20 101.7 100 56.0
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.4e-20 100.5 98 55.1
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.4e-20 100.5 98 55.1
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 6.4e-20 100.5 92 57.6
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.4e-19 99.4 95 57.9
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.9e-19 99.0 108 50.9
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.9e-19 99.0 96 57.3
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 1.9e-19 99.0 96 52.1
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 1.9e-19 99.0 91 51.6
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 3.2e-19 98.2 93 54.8
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 3.2e-19 98.2 97 52.6
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 5.4e-19 97.4 95 51.6
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.1e-19 97.1 96 50.0
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 9.2e-19 96.7 95 51.6
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.2e-18 96.3 96 52.1
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.1e-18 95.5 98 52.0
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 2.1e-18 95.5 94 50.0
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.7e-18 95.1 94 51.1
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 6.0e-18 94.0 93 53.8
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 7.8e-18 93.6 94 51.1
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.0e-17 93.2 93 51.6
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.0e-17 93.2 92 52.2
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.7e-17 92.4 81 56.8
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.7e-17 92.4 82 53.7
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 3.9e-17 91.3 87 57.5
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 6.6e-17 90.5 95 50.5
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 6.6e-17 90.5 97 52.6
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 8.6e-17 90.1 96 55.2
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.9e-16 89.0 82 52.4
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.9e-16 89.0 93 48.4
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 3.3e-16 88.2 90 48.9
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 3.3e-16 88.2 93 50.5
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.3e-16 88.2 96 45.8
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.3e-16 88.2 96 49.0
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 5.6e-16 87.4 69 59.4
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 7.3e-16 87.0 90 52.2
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.6e-15 85.9 90 51.1
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.6e-15 85.9 94 52.1
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.6e-15 85.9 94 52.1
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 2.1e-15 85.5 89 51.7
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 3.6e-15 84.7 90 45.6
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 3.6e-15 84.7 105 46.7
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 8.1e-15 83.6 94 46.8
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.1e-14 83.2 96 50.0
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.8e-14 82.4 95 46.3
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.8e-14 82.4 90 50.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.8e-14 82.4 89 52.8
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.1e-14 81.6 98 46.9
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 4.0e-14 81.3 92 47.8
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 5.2e-14 80.9 95 49.5
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 8.9e-14 80.1 100 47.0
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 8.9e-14 80.1 93 50.5
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.5e-13 79.3 97 44.3
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.0e-13 79.0 97 46.4
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.6e-13 78.6 109 42.2
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 2.6e-13 78.6 76 44.7
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 2.6e-13 78.6 97 50.5
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.4e-13 78.2 97 45.4
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 4.4e-13 77.8 109 43.1
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.8e-13 77.4 95 45.3
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 5.8e-13 77.4 100 50.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.3e-12 76.3 91 42.9
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.3e-12 76.3 92 42.4
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.3e-12 76.3 100 49.0
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.3e-12 76.3 74 45.9
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.2e-12 75.5 88 47.7
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.8e-12 74.7 88 45.5
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 4.9e-12 74.3 97 43.3
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 6.4e-12 73.9 91 42.9
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 6.4e-12 73.9 84 45.2
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 8.4e-12 73.6 86 41.9
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 8.4e-12 73.6 86 41.9
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.1e-11 73.2 93 43.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.4e-11 72.0 86 40.7
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.4e-11 72.0 90 44.4
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.4e-11 72.0 93 41.9
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 3.2e-11 71.6 86 40.7
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 3.2e-11 71.6 94 46.8
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 4.1e-11 71.2 88 42.0
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 4.1e-11 71.2 86 40.7
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 4.1e-11 71.2 49 57.1
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.1e-11 71.2 86 45.3
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.4e-11 70.9 84 46.4
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 7.1e-11 70.5 101 43.6
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 7.1e-11 70.5 101 43.6
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.2e-10 69.7 94 39.4
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.1e-10 68.9 86 41.9
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.1e-10 68.9 88 40.9
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 2.7e-10 68.6 86 41.9
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 2.7e-10 68.6 86 41.9
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 7.8e-10 67.0 86 40.7
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 7.8e-10 67.0 86 40.7
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 7.8e-10 67.0 95 45.3
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 7.8e-10 67.0 79 45.6
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.0e-09 66.6 101 39.6
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.3e-09 66.2 86 40.7
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.3e-09 66.2 84 41.7
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 8.7e-09 63.5 84 40.5
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.1e-08 63.2 86 38.4
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 2.5e-08 62.0 84 40.5
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 4.3e-08 61.2 73 42.5
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 5.6e-08 60.8 89 37.1
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 9.6e-08 60.1 93 43.0
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.2e-07 59.7 81 38.3
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.1e-07 58.9 95 38.9
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.8e-07 58.5 92 41.3
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 3.6e-07 58.2 92 35.9
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 4.7e-07 57.8 77 37.7
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.4e-06 56.2 91 40.7
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 3.1e-06 55.1 93 36.6


User provided reference genes

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