Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 8.0e-110 400.6 225 100.0
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.1e-79 300.4 216 78.2
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 2.0e-76 289.7 216 74.5
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 8.4e-75 284.3 216 72.2
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 2.7e-73 279.3 216 71.3
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 5.6e-71 271.6 224 70.1
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 4.7e-70 268.5 224 69.2
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.0e-68 263.1 225 68.0
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 5.4e-66 255.0 223 66.8
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.6e-65 251.9 213 66.7
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 1.3e-62 243.8 215 63.7
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 9.9e-60 234.2 214 64.5
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.7e-59 233.4 216 63.9
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 2.9e-59 232.6 212 63.2
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 2.9e-59 232.6 214 64.0
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 2.4e-58 229.6 214 64.5
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.7e-57 226.1 213 59.6
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 2.7e-57 226.1 211 61.6
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 4.6e-57 225.3 214 62.1
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 7.9e-57 224.6 223 57.0
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 2.3e-56 223.0 213 59.6
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 3.0e-56 222.6 229 59.0
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.0e-56 222.6 223 57.4
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 1.1e-55 220.7 220 56.8
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.5e-55 220.3 223 57.8
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.9e-55 219.9 214 61.2
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 5.6e-55 218.4 223 57.0
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 7.4e-55 218.0 223 56.5
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 7.4e-55 218.0 214 60.3
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 9.6e-55 217.6 214 59.3
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 9.6e-55 217.6 216 57.9
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 4.8e-54 215.3 213 59.2
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 4.8e-54 215.3 215 60.0
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 1.4e-53 213.8 210 61.0
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.8e-53 213.4 214 58.9
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.1e-53 212.6 214 58.9
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 4.0e-53 212.2 217 56.2
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 6.9e-53 211.5 213 56.8
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.5e-52 210.3 214 58.9
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 2.0e-52 209.9 220 55.0
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 2.0e-52 209.9 214 57.0
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 5.8e-52 208.4 214 58.4
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 2.2e-51 206.5 220 56.8
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 3.8e-51 205.7 210 56.7
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 6.4e-51 204.9 215 58.1
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 7.1e-50 201.4 214 57.5
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 2.1e-49 199.9 223 54.3
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 2.7e-49 199.5 215 57.2
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 2.7e-49 199.5 218 54.6
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 3.5e-49 199.1 212 53.8
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 1.3e-48 197.2 219 56.2
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 6.7e-48 194.9 213 55.4
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 1.1e-47 194.1 211 53.6
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 1.5e-47 193.7 216 52.8
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 5.6e-47 191.8 206 53.9
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 7.4e-47 191.4 211 54.0
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 9.6e-47 191.0 212 52.4
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 6.2e-46 188.3 217 51.2
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 8.1e-46 188.0 213 52.1
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 1.1e-45 187.6 178 61.2
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 6.9e-45 184.9 212 53.8
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 2.0e-44 183.3 202 55.4
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.0e-44 183.3 213 49.8
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 7.6e-44 181.4 210 56.2
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.3e-43 180.6 215 52.6
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.3e-43 180.6 217 48.4
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 2.9e-43 179.5 200 52.0
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 2.9e-43 179.5 217 52.1
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 3.8e-43 179.1 216 49.5
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 4.9e-43 178.7 216 49.5
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 6.5e-43 178.3 213 48.4
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 1.4e-42 177.2 231 47.2
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.4e-42 177.2 223 48.9
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 5.5e-42 175.3 210 49.0
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 7.1e-42 174.9 213 49.8
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.0e-41 171.8 211 49.3
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.0e-40 171.0 222 48.6
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.3e-40 170.6 215 48.4
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 3.9e-40 169.1 211 47.4
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 6.7e-40 168.3 217 48.4
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 8.7e-40 167.9 211 48.8
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 4.3e-39 165.6 215 48.4
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 2.1e-38 163.3 212 47.6
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.8e-38 162.9 213 47.9
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 4.8e-38 162.2 212 46.2
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 4.8e-38 162.2 212 45.3
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 6.3e-38 161.8 212 47.2
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 8.2e-38 161.4 211 45.5
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 8.2e-38 161.4 213 47.9
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 1.1e-37 161.0 212 48.1
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.1e-37 161.0 212 46.7
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 1.1e-37 161.0 213 46.5
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.4e-37 160.6 213 48.4
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.1e-37 159.1 213 47.9
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 7.6e-36 154.8 212 47.6
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 7.6e-36 154.8 215 46.5
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 1.3e-35 154.1 214 44.9
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.7e-35 153.7 212 44.3
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 2.9e-35 152.9 212 47.2
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 2.9e-35 152.9 218 42.2
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 6.5e-35 151.8 165 55.2
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 8.4e-35 151.4 207 44.4
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.4e-34 150.6 199 47.2
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 1.4e-34 150.6 215 44.7
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 1.4e-34 150.6 213 44.1
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 9.3e-34 147.9 201 43.8
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 6.1e-33 145.2 219 42.9
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 6.1e-33 145.2 216 44.9
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 1.8e-32 143.7 216 42.1
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 3.9e-32 142.5 210 43.8
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 5.1e-32 142.1 207 46.4
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 8.7e-32 141.4 209 41.1
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 7.4e-31 138.3 215 42.8
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 7.4e-31 138.3 217 41.0
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 9.7e-31 137.9 220 42.7
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.3e-30 137.5 214 44.9
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 8.2e-30 134.8 213 42.7
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 8.2e-30 134.8 214 41.1
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.8e-29 133.7 225 40.0
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 4.1e-29 132.5 142 55.6
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.5e-28 130.6 194 45.4
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.3e-27 127.5 202 41.6
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 2.9e-27 126.3 195 41.5
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 6.5e-27 125.2 195 41.0
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.2e-25 120.9 221 38.0
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.6e-25 119.4 142 52.1
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 4.6e-25 119.0 200 40.0
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 1.0e-24 117.9 192 40.6
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.4e-24 117.5 209 38.8
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.8e-24 117.1 215 40.0
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 3.9e-24 115.9 192 39.6
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 3.9e-24 115.9 192 39.6
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 3.9e-24 115.9 192 40.1
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 6.7e-24 115.2 201 38.3
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 8.8e-24 114.8 217 37.3
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 1.1e-23 114.4 213 39.0
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.5e-23 113.2 140 50.0
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 3.3e-23 112.8 196 39.3
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 5.7e-23 112.1 202 38.1
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 1.3e-22 110.9 210 38.1
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 1.3e-22 110.9 210 38.6
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 1.3e-22 110.9 214 38.8
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 1.7e-22 110.5 115 53.9
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.7e-22 110.5 219 40.2
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 2.2e-22 110.2 186 39.2
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 1.2e-20 104.4 195 39.5
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 3.4e-20 102.8 215 38.6
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 1.3e-19 100.9 144 43.1
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 6.5e-19 98.6 138 42.8
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 5.5e-18 95.5 125 45.6
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.3e-16 90.1 138 41.3
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 2.3e-08 63.5 77 48.1
Phvul.008G182701 Phaseolus vulgaris HOM05D004648 ORTHO05D307582 2.6e-07 60.1 99 39.4


User provided reference genes

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