Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.1e-130 469.9 236 100.0
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 2.1e-113 412.5 232 87.1
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 7.6e-111 404.1 232 87.5
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 9.9e-111 403.7 232 87.5
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.3e-110 403.3 232 87.1
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 2.2e-110 402.5 232 87.5
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 5.4e-109 397.9 230 84.3
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 2.1e-108 396.0 233 84.5
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.7e-108 395.6 230 83.0
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.7e-107 392.9 232 84.9
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.7e-107 392.9 232 83.2
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 6.6e-107 391.0 232 83.2
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 9.0e-104 380.6 230 80.9
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.6e-100 369.8 230 79.6
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.0e-99 367.1 228 79.4
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.3e-97 360.1 232 76.3
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.6e-97 359.8 227 77.5
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 3.7e-97 358.6 228 77.2
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 6.2e-97 357.8 227 77.1
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 2.4e-96 355.9 230 74.3
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 4.0e-96 355.1 231 71.9
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 6.9e-96 354.4 224 77.7
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 9.0e-96 354.0 232 75.4
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.5e-95 353.2 228 76.8
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.5e-95 353.2 224 77.7
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 2.0e-95 352.8 232 74.6
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.0e-95 352.8 231 72.3
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 4.5e-95 351.7 227 74.4
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 5.8e-95 351.3 231 71.9
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 7.6e-95 350.9 232 74.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.0e-94 350.5 227 75.3
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.3e-94 350.1 227 74.9
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.9e-94 349.0 225 75.6
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.9e-94 349.0 228 75.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 8.4e-94 347.4 232 72.4
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.4e-93 346.7 231 70.1
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.4e-93 346.7 227 74.0
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 2.5e-93 345.9 228 73.7
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 3.2e-93 345.5 228 74.1
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 3.2e-93 345.5 227 73.1
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 5.5e-93 344.7 232 72.4
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 7.1e-93 344.4 227 74.0
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 7.1e-93 344.4 218 77.1
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 9.3e-93 344.0 231 74.0
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 74.9
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 74.0
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.2e-92 343.6 227 74.4
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 2.7e-92 342.4 227 74.4
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 7.9e-92 340.9 233 73.4
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.0e-91 340.5 224 73.2
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.3e-91 340.1 227 73.1
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.3e-91 340.1 228 73.2
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.3e-91 340.1 228 73.2
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.3e-91 340.1 225 74.2
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.8e-91 339.7 232 71.1
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.8e-91 339.7 232 73.7
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 3.9e-91 338.6 232 70.7
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 5.1e-91 338.2 230 70.4
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 6.7e-91 337.8 226 74.8
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 1.5e-90 336.7 228 72.4
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 1.5e-90 336.7 232 69.8
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.9e-90 336.3 225 73.8
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 1.9e-90 336.3 228 71.5
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 2.5e-90 335.9 228 72.8
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 5.7e-90 334.7 232 72.0
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.3e-89 333.6 232 70.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.3e-89 333.6 232 70.3
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.3e-89 333.6 228 72.8
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 2.1e-89 332.8 233 73.8
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.1e-89 332.8 229 69.4
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.8e-89 332.4 232 71.6
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 4.8e-89 331.6 227 71.8
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 6.2e-89 331.3 223 71.7
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 6.2e-89 331.3 232 69.4
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.8e-88 329.7 225 71.1
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.8e-88 329.7 226 73.5
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 2.4e-88 329.3 232 69.8
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 3.1e-88 328.9 228 71.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 3.1e-88 328.9 230 71.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 4.1e-88 328.6 230 68.3
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 5.3e-88 328.2 230 72.2
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.9e-88 327.8 232 69.0
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 9.0e-88 327.4 224 71.9
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 9.0e-88 327.4 218 75.2
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 2.0e-87 326.2 231 71.4
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.0e-87 326.2 225 70.2
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.0e-87 326.2 225 70.7
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 2.6e-87 325.9 225 70.7
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 2.6e-87 325.9 224 69.2
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 228 71.1
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.4e-87 325.5 225 70.7
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 4.5e-87 325.1 225 71.1
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.0e-86 323.9 225 70.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.7e-86 323.2 225 70.2
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.2e-86 322.8 229 69.9
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 2.9e-86 322.4 225 69.8
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.9e-86 322.4 229 71.2
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.9e-86 322.4 231 69.7
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 3.8e-86 322.0 225 69.3
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.8e-86 322.0 223 70.9
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 3.8e-86 322.0 229 69.9
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 3.8e-86 322.0 268 62.7
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 5.0e-86 321.6 230 69.1
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 5.0e-86 321.6 223 71.3
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 5.0e-86 321.6 225 69.3
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.9e-85 319.7 229 69.0
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 3.2e-85 318.9 230 68.3
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.2e-84 317.0 229 70.7
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.2e-84 317.0 225 68.0
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.3e-83 313.5 224 68.3
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.3e-83 313.5 224 67.4
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.3e-83 312.8 201 74.6
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.5e-82 310.1 227 65.6
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.3e-81 307.0 227 65.2
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.1e-80 302.0 232 65.1
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 2.6e-79 299.3 225 65.8
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 3.4e-79 298.9 230 64.3
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.0e-78 297.4 204 72.5
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.3e-78 297.0 221 65.2
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 8.5e-78 294.3 232 64.2
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 8.5e-78 294.3 312 49.7
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.9e-77 293.1 195 74.9
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 7.9e-76 287.7 234 60.7
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.0e-75 285.8 210 65.2
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 3.3e-74 282.3 188 73.9
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.4e-74 281.2 224 64.3
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.4e-71 272.3 201 66.7
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.3e-67 259.6 181 70.2
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.7e-65 252.3 235 57.9
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 3.7e-65 252.3 212 59.0
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 8.2e-65 251.1 182 68.7
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 9.1e-64 247.7 216 56.5
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 7.7e-63 244.6 154 77.3
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 8.8e-59 231.1 213 58.7
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.7e-57 226.9 133 82.0
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 2.2e-57 226.5 232 51.3
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.7e-57 225.7 144 76.4
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 4.8e-57 225.3 219 51.6
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-52 209.9 124 81.5
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 5.9e-47 191.8 138 68.8
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 2.2e-46 189.9 144 66.7
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 5.0e-46 188.7 147 66.0
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.4e-43 180.6 142 66.2
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 2.3e-43 179.9 144 61.8
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 4.4e-42 175.6 117 70.1
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 5.7e-42 175.3 142 60.6
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 9.8e-42 174.5 133 65.4
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 1.7e-41 173.7 134 64.2
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 7.0e-40 168.3 191 46.6
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 2.3e-38 163.3 118 66.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.1e-37 161.0 184 45.1
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 4.3e-37 159.1 131 67.2
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 6.1e-36 155.2 126 62.7
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 3.0e-35 152.9 85 83.5
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 8.9e-35 151.4 91 80.2
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.2e-34 151.0 194 45.9
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 4.4e-34 149.1 113 63.7
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.1e-32 144.4 85 82.4
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 2.4e-32 143.3 109 67.9
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.3e-30 137.5 102 69.6
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 4.3e-29 132.5 85 76.5
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 6.2e-28 128.6 81 79.0
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.8e-27 127.1 91 71.4
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 3.1e-27 126.3 77 80.5
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 2.6e-26 123.2 95 67.4
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 9.8e-26 121.3 85 65.9
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.9e-24 117.1 85 68.2
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 2.0e-23 113.6 69 76.8
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.0e-22 111.3 70 74.3
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.3e-22 110.2 85 65.9
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 3.3e-21 106.3 125 48.8
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 3.6e-20 102.8 99 55.6
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 2.0e-18 97.1 88 59.1
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.1e-16 91.3 59 72.9
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.4e-16 90.1 89 50.6
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 5.4e-16 89.0 63 71.4
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 1.1e-13 81.3 219 29.2
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.5e-13 80.9 182 31.3
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 7.3e-13 78.6 64 59.4
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-10 71.2 60 56.7
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.6e-10 70.1 185 29.7
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 4.4e-10 69.3 49 65.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.3e-09 67.8 67 47.8


User provided reference genes

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