Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 2.1e-70 268.9 131 100.0
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 4.2e-26 121.7 109 64.2
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 9.3e-26 120.6 98 69.4
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 4.6e-25 118.2 116 56.9
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 2.3e-24 115.9 98 66.3
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 1.8e-21 106.3 107 58.9
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 1.0e-19 100.5 109 56.9
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 2.2e-19 99.4 97 70.1
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 2.2e-19 99.4 131 50.4
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 4.9e-19 98.2 109 55.0
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 1.9e-18 96.3 102 63.7
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 3.2e-18 95.5 113 57.5
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 5.5e-18 94.7 95 62.1
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 9.3e-18 94.0 94 64.9
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 1.6e-17 93.2 115 53.9
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 7.9e-17 90.9 132 46.2
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 1.3e-16 90.1 93 62.4
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 1.8e-16 89.7 103 54.4
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 5.1e-16 88.2 93 60.2
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 6.7e-16 87.8 82 62.2
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 1.1e-15 87.0 103 54.4
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 1.9e-15 86.3 84 58.3
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 4.3e-15 85.1 126 44.4
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 1.6e-14 83.2 76 59.2
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 1.6e-14 83.2 91 52.7
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 2.1e-14 82.8 105 51.4
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 2.8e-14 82.4 86 55.8
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 3.7e-14 82.0 89 55.1
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 4.8e-14 81.6 112 46.4
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 4.8e-14 81.6 89 55.1
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.3e-14 81.3 129 44.2
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 6.3e-14 81.3 100 52.0
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 6.3e-14 81.3 105 52.4
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 1.1e-13 80.5 95 56.8
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 1.4e-13 80.1 80 56.2
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 1.8e-13 79.7 81 56.8
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 1.8e-13 79.7 79 57.0
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 4.1e-13 78.6 89 53.9
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 9.0e-13 77.4 98 54.1
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 9.0e-13 77.4 71 64.8
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.2e-12 77.0 62 61.3
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.5e-12 76.6 74 63.5
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 2.0e-12 76.3 90 50.0
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.6e-12 75.9 94 51.1
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.6e-12 75.9 94 51.1
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.6e-12 75.9 94 51.1
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 5.9e-12 74.7 85 50.6
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 1.0e-11 73.9 94 50.0
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 1.0e-11 73.9 115 44.3
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 1.7e-11 73.2 79 54.4
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 2.2e-11 72.8 93 47.3
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 2.9e-11 72.4 70 61.4
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 2.9e-11 72.4 80 55.0
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 5.0e-11 71.6 99 50.5
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 5.0e-11 71.6 99 50.5
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 5.0e-11 71.6 99 50.5
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 5.0e-11 71.6 72 56.9
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 5.0e-11 71.6 110 44.5
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 1.4e-10 70.1 96 46.9
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 3.2e-10 68.9 53 64.2
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 4.2e-10 68.6 116 42.2
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 5.5e-10 68.2 74 58.1
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 5.5e-10 68.2 93 50.5
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 7.2e-10 67.8 81 54.3
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.1e-09 66.2 65 58.5
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 3.5e-09 65.5 66 50.0
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 4.6e-09 65.1 68 55.9
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 4.6e-09 65.1 74 59.5
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 4.6e-09 65.1 74 59.5
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 6.1e-09 64.7 98 48.0
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 2.3e-08 62.8 93 40.9
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 2.3e-08 62.8 84 48.8
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 3.0e-08 62.4 74 56.8
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 3.0e-08 62.4 74 56.8
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 3.0e-08 62.4 74 56.8
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 3.9e-08 62.0 74 58.1
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 5.1e-08 61.6 102 45.1
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 8.7e-08 60.8 52 61.5
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 8.7e-08 60.8 83 44.6
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 1.9e-07 59.7 76 50.0
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 2.5e-07 59.3 98 46.9
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 2.5e-07 59.3 79 50.6
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 3.3e-07 58.9 75 54.7
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 3.3e-07 58.9 75 52.0
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 4.3e-07 58.5 94 47.9
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 4.3e-07 58.5 101 43.6
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 5.7e-07 58.2 82 46.3
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 7.4e-07 57.8 76 48.7
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 9.7e-07 57.4 52 55.8
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 1.3e-06 57.0 77 48.1
Oeu006910.1 Olea europaea HOM05D007325 ORTHO05D009251 1.3e-06 57.0 86 41.9
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 2.8e-06 55.8 93 44.1
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 3.7e-06 55.5 79 46.8
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 4.8e-06 55.1 68 52.9
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 4.8e-06 55.1 46 67.4
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 4.8e-06 55.1 78 42.3
Sed0022272 Sechium edule HOM05D007325 ORTHO05D009251 6.3e-06 54.7 60 46.7


User provided reference genes

Program Settings