Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 1.7e-28 130.2 121 100.0
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 8.2e-23 111.3 121 81.8
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 7.7e-21 104.8 69 84.1
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 1.7e-20 103.6 69 82.6
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 2.9e-20 102.8 109 81.7
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 1.9e-19 100.1 69 79.7
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 3.2e-19 99.4 69 81.2
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 4.2e-19 99.0 110 70.9
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 4.2e-19 99.0 69 79.7
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 5.5e-19 98.6 69 79.7
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 7.2e-19 98.2 66 83.3
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 9.4e-19 97.8 69 78.3
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 2.1e-18 96.7 67 80.6
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 2.7e-18 96.3 69 76.8
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 7.9e-18 94.7 69 75.4
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 7.9e-18 94.7 67 79.1
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 1.0e-17 94.4 110 72.7
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 1.0e-17 94.4 69 76.8
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 1.4e-17 94.0 110 72.7
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 1.4e-17 94.0 67 77.6
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 1.4e-17 94.0 66 78.8
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.8e-17 93.6 67 77.6
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 1.8e-17 93.6 67 79.1
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 2.3e-17 93.2 67 77.6
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 2.3e-17 93.2 67 79.1
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 3.0e-17 92.8 67 77.6
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 3.0e-17 92.8 67 77.6
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 3.9e-17 92.4 67 76.1
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 3.9e-17 92.4 67 76.1
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 5.1e-17 92.0 68 73.5
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 5.1e-17 92.0 67 77.6
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 5.1e-17 92.0 67 76.1
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 6.7e-17 91.7 67 76.1
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 1.1e-16 90.9 69 73.9
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 1.1e-16 90.9 66 77.3
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 1.1e-16 90.9 69 72.5
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 2.5e-16 89.7 66 75.8
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 3.3e-16 89.4 66 75.8
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 3.3e-16 89.4 67 73.1
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 4.3e-16 89.0 67 73.1
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 4.3e-16 89.0 64 78.1
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 4.3e-16 89.0 67 74.6
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 4.3e-16 89.0 69 71.0
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 5.7e-16 88.6 69 68.1
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 7.4e-16 88.2 66 74.2
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 7.4e-16 88.2 69 71.0
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 9.7e-16 87.8 64 78.1
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 9.7e-16 87.8 64 76.6
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 1.3e-15 87.4 64 76.6
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 1.3e-15 87.4 66 71.2
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 1.7e-15 87.0 64 75.0
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 1.7e-15 87.0 66 72.7
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 2.2e-15 86.7 67 71.6
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 2.2e-15 86.7 66 72.7
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 2.8e-15 86.3 64 75.0
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 2.8e-15 86.3 66 74.2
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 4.8e-15 85.5 67 71.6
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 4.8e-15 85.5 64 75.0
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 4.8e-15 85.5 64 75.0
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 6.3e-15 85.1 67 70.1
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 6.3e-15 85.1 66 71.2
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 8.2e-15 84.7 64 75.0
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 8.2e-15 84.7 64 73.4
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 8.2e-15 84.7 64 73.4
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 8.2e-15 84.7 64 73.4
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 8.2e-15 84.7 64 73.4
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 1.4e-14 84.0 67 68.7
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 1.4e-14 84.0 67 70.1
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 1.4e-14 84.0 66 71.2
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 1.4e-14 84.0 67 70.1
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 1.8e-14 83.6 64 71.9
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 2.4e-14 83.2 63 71.4
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 2.4e-14 83.2 64 71.9
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 3.1e-14 82.8 66 68.2
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 4.1e-14 82.4 66 68.2
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 5.3e-14 82.0 69 65.2
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 6.9e-14 81.6 67 65.7
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 6.9e-14 81.6 66 68.2
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 9.1e-14 81.3 64 68.8
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 1.5e-13 80.5 66 68.2
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 3.4e-13 79.3 63 69.8
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 4.5e-13 79.0 69 63.8
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 2.2e-12 76.6 57 75.4
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 8.5e-12 74.7 64 68.8
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 1.9e-11 73.6 88 54.5
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 2.7e-10 69.7 55 69.1
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 3.6e-10 69.3 59 66.1
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 7.9e-10 68.2 56 67.9
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 1.8e-09 67.0 56 66.1
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 5.1e-09 65.5 50 74.0
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 8.8e-09 64.7 57 63.2
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 1.7e-07 60.5 60 56.7
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 7.0e-06 55.1 59 54.2
COL.COLO4_10551 Corchorus olitorius HOM05D007682 ORTHO05D009690 9.1e-06 54.7 33 84.8


User provided reference genes

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