Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0016145 Lotus japonicus HOM05D007355 ORTHO05D009343 1.2e-62 243.0 122 100.0
Glyma.04G024700 Glycine max HOM05D007355 ORTHO05D009343 1.6e-32 142.9 119 71.4
Glyma.06G024800 Glycine max HOM05D007355 ORTHO05D009343 1.6e-32 142.9 115 73.9
VMungo1309G0669 Vigna mungo HOM05D007355 ORTHO05D009343 8.1e-32 140.6 123 71.5
Phvul.009G016500 Phaseolus vulgaris HOM05D007355 ORTHO05D009343 1.4e-28 129.8 124 69.4
Lalb_Chr14g0369841 Lupinus albus HOM05D007355 ORTHO05D009343 4.3e-25 118.2 109 63.3
TAR625G0791 Trochodendron aralioides HOM05D007355 ORTHO05D009343 4.8e-24 114.8 110 61.8
Thecc.08G043500 Theobroma cacao HOM05D007355 ORTHO05D009343 6.9e-23 110.9 94 69.1
TPR.G26402 Trifolium pratense HOM05D007355 ORTHO05D009343 9.0e-23 110.5 115 56.5
arahy.Tifrunner.gnm1.ann1.PADY8Y Arachis hypogaea HOM05D007355 ORTHO05D009343 1.5e-22 109.8 97 69.1
arahy.Tifrunner.gnm1.ann1.Y2NNQI Arachis hypogaea HOM05D007355 ORTHO05D009343 2.0e-22 109.4 95 69.5
CiPaw.08G065900 Carya illinoinensis HOM05D007355 ORTHO05D009343 3.4e-22 108.6 100 66.0
Gohir.A06G004700 Gossypium hirsutum HOM05D007355 ORTHO05D009343 4.4e-22 108.2 107 58.9
COL.COLO4_26156 Corchorus olitorius HOM05D007355 ORTHO05D009343 7.6e-22 107.5 118 58.5
Gohir.D06G000500 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.7e-21 106.3 107 57.9
Gorai.010G004900 Gossypium raimondii HOM05D007355 ORTHO05D009343 1.7e-21 106.3 107 57.9
Lj5g0016063 Lotus japonicus HOM05D007355 ORTHO05D009343 1.7e-21 106.3 133 50.4
QL02p011487 Quercus lobata HOM05D007355 ORTHO05D009343 1.7e-21 106.3 89 66.3
FAN15G2202 Fragaria x ananassa HOM05D007355 ORTHO05D009343 2.9e-21 105.5 119 52.9
FAN27G0012 Fragaria x ananassa HOM05D007355 ORTHO05D009343 2.9e-21 105.5 119 52.9
Lalb_Chr22g0354351 Lupinus albus HOM05D007355 ORTHO05D009343 2.9e-21 105.5 90 67.8
Haze_22626 Corylus avellana HOM05D007355 ORTHO05D009343 6.4e-21 104.4 85 68.2
Potri.005G238400 Populus trichocarpa HOM05D007355 ORTHO05D009343 1.1e-20 103.6 97 63.9
FAN20G0162 Fragaria x ananassa HOM05D007355 ORTHO05D009343 1.4e-20 103.2 105 56.2
Actinidia37930 Actinidia chinensis HOM05D007355 ORTHO05D009343 1.9e-20 102.8 103 54.4
PGR083G2600 Punica granatum HOM05D007355 ORTHO05D009343 4.2e-20 101.7 97 57.7
Manes.18G014200 Manihot esculenta HOM05D007355 ORTHO05D009343 5.4e-20 101.3 97 60.8
Sabra05G0184200 Salix brachista HOM05D007355 ORTHO05D009343 5.4e-20 101.3 94 62.8
Gorai.009G194900 Gossypium raimondii HOM05D007355 ORTHO05D009343 7.1e-20 100.9 100 61.0
Gohir.A05G186732 Gossypium hirsutum HOM05D007355 ORTHO05D009343 2.1e-19 99.4 100 60.0
Ca_13424_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 2.7e-19 99.0 90 66.7
Ca_13425_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 2.7e-19 99.0 90 66.7
Aqoxy5G01778 Aquilegia oxysepala HOM05D007355 ORTHO05D009343 4.6e-19 98.2 116 58.6
Cpa.g.sc26.34 Carica papaya HOM05D007355 ORTHO05D009343 6.0e-19 97.8 115 53.9
Gohir.D05G189650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 6.0e-19 97.8 100 60.0
Manes.05G148200 Manihot esculenta HOM05D007355 ORTHO05D009343 1.0e-18 97.1 94 58.5
Nn1g05885 Nelumbo nucifera HOM05D007355 ORTHO05D009343 1.7e-18 96.3 109 55.0
Sed0024841 Sechium edule HOM05D007355 ORTHO05D009343 1.7e-18 96.3 112 47.3
Duzib093G0416 Durio zibethinus HOM05D007355 ORTHO05D009343 3.0e-18 95.5 87 66.7
Nn5g30158 Nelumbo nucifera HOM05D007355 ORTHO05D009343 3.0e-18 95.5 110 55.5
ClCG05G018320 Citrullus lanatus HOM05D007355 ORTHO05D009343 3.9e-18 95.1 80 60.0
Cfa013942 Carpinus fangiana HOM05D007355 ORTHO05D009343 8.7e-18 94.0 86 62.8
ClCG08G014360 Citrullus lanatus HOM05D007355 ORTHO05D009343 8.7e-18 94.0 112 47.3
Ciclev10003277m.g Citrus clementina HOM05D007355 ORTHO05D009343 1.5e-17 93.2 86 65.1
CsaV3_3G045820 Cucumis sativus L. HOM05D007355 ORTHO05D009343 1.9e-17 92.8 76 60.5
Dinv39511 Davidia involucrata HOM05D007355 ORTHO05D009343 1.9e-17 92.8 102 56.9
Solyc04g081380.1 Solanum lycopersicum HOM05D007355 ORTHO05D009343 1.9e-17 92.8 125 49.6
PGSC0003DMG400009860 Solanum tuberosum HOM05D007355 ORTHO05D009343 1.9e-17 92.8 125 50.4
Medtr1g025150 Medicago truncatula HOM05D007355 ORTHO05D009343 2.5e-17 92.4 86 60.5
MELO3C011006.2 Cucumis melo HOM05D007355 ORTHO05D009343 3.3e-17 92.0 117 46.2
Sed0019478 Sechium edule HOM05D007355 ORTHO05D009343 5.6e-17 91.3 87 56.3
CiPaw.07G150900 Carya illinoinensis HOM05D007355 ORTHO05D009343 7.3e-17 90.9 103 55.3
CsaV3_2G029470 Cucumis sativus L. HOM05D007355 ORTHO05D009343 9.6e-17 90.5 112 47.3
Gorai.009G270200 Gossypium raimondii HOM05D007355 ORTHO05D009343 9.6e-17 90.5 89 61.8
Gohir.A05G257150 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.3e-16 90.1 88 62.5
MD15G1013100 Malus domestica HOM05D007355 ORTHO05D009343 2.8e-16 89.0 88 59.1
MBI05_g15356_MAGBIO Magnolia biondii HOM05D007355 ORTHO05D009343 3.6e-16 88.6 93 54.8
Gohir.D05G258650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.1e-15 87.0 89 60.7
Hma1.2p1_0638F.1_g193820 Hydrangea macrophylla HOM05D007355 ORTHO05D009343 3.1e-15 85.5 117 49.6
DCAR_017465 Daucus carota HOM05D007355 ORTHO05D009343 1.5e-14 83.2 113 45.1
CSS0013130 Camellia sinensis var. sinensis HOM05D007355 ORTHO05D009343 4.5e-14 81.6 90 52.2
Lsat_1_v5_gn_2_9841 Lactuca sativa HOM05D007355 ORTHO05D009343 5.8e-14 81.3 115 46.1
Peaxi162Scf00400g00042 Petunia axillaris HOM05D007355 ORTHO05D009343 1.3e-13 80.1 101 51.5
Prupe.1G366200 Prunus persica HOM05D007355 ORTHO05D009343 2.2e-13 79.3 83 56.6
A08p29560 Brassica napus HOM05D007355 ORTHO05D009343 3.8e-13 78.6 83 51.8
C08p19840 Brassica napus HOM05D007355 ORTHO05D009343 3.8e-13 78.6 83 51.8
BolC8t49623H Brassica oleracea HOM05D007355 ORTHO05D009343 3.8e-13 78.6 83 51.8
BraA08t34894Z Brassica rapa HOM05D007355 ORTHO05D009343 3.8e-13 78.6 83 51.8
Rhsim07G0246800 Rhododendron simsii HOM05D007355 ORTHO05D009343 4.9e-13 78.2 75 56.0
BcaC07g39013 Brassica carinata HOM05D007355 ORTHO05D009343 6.4e-13 77.8 83 51.8
Atru.chr13.303 Acer truncatum HOM05D007355 ORTHO05D009343 1.4e-12 76.6 79 59.5
Aa31LG4G5940 Aethionema arabicum HOM05D007355 ORTHO05D009343 2.4e-12 75.9 69 59.4
DCAR_013865 Daucus carota HOM05D007355 ORTHO05D009343 2.4e-12 75.9 108 45.4
C06p49660 Brassica napus HOM05D007355 ORTHO05D009343 5.4e-12 74.7 74 63.5
BolC6t40005H Brassica oleracea HOM05D007355 ORTHO05D009343 5.4e-12 74.7 74 63.5
Sp1g17750 Schrenkiella parvula HOM05D007355 ORTHO05D009343 7.1e-12 74.3 82 52.4
THA.LOC104814032 Tarenaya hassleriana HOM05D007355 ORTHO05D009343 7.1e-12 74.3 78 59.0
Carub.0002s2256 Capsella rubella HOM05D007355 ORTHO05D009343 9.3e-12 73.9 72 58.3
Eucgr.F01645 Eucalyptus grandis HOM05D007355 ORTHO05D009343 9.3e-12 73.9 74 60.8
AT1G75717 Arabidopsis thaliana HOM05D007355 ORTHO05D009343 1.2e-11 73.6 72 56.9
BcaB03g14421 Brassica carinata HOM05D007355 ORTHO05D009343 1.2e-11 73.6 90 47.8
SalBow7G4291 Salvia bowleyana HOM05D007355 ORTHO05D009343 1.6e-11 73.2 83 51.8
CARHR020450 Cardamine hirsuta HOM05D007355 ORTHO05D009343 2.1e-11 72.8 90 46.7
AL2G35700 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 2.7e-11 72.4 71 57.7
Sc15g0005040 Simmondsia chinensis HOM05D007355 ORTHO05D009343 3.5e-11 72.0 91 46.2
AL1G32690 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 6.0e-11 71.2 76 53.9
BcaC08g47049 Brassica carinata HOM05D007355 ORTHO05D009343 6.0e-11 71.2 70 58.6
CAN.G311.23 Capsicum annuum HOM05D007355 ORTHO05D009343 6.0e-11 71.2 51 72.5
A07p41240 Brassica napus HOM05D007355 ORTHO05D009343 7.9e-11 70.9 72 58.3
BraA07t31659Z Brassica rapa HOM05D007355 ORTHO05D009343 7.9e-11 70.9 72 58.3
Thhalv10019842m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 7.9e-11 70.9 70 60.0
BcaB03g12886 Brassica carinata HOM05D007355 ORTHO05D009343 1.3e-10 70.1 94 41.5
Thhalv10009918m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 1.3e-10 70.1 75 53.3
Carub.0001s1949 Capsella rubella HOM05D007355 ORTHO05D009343 5.1e-10 68.2 77 50.6
CARHR069120 Cardamine hirsuta HOM05D007355 ORTHO05D009343 5.1e-10 68.2 70 58.6
Ah.11g039070 Amaranthus hybridus HOM05D007355 ORTHO05D009343 1.1e-09 67.0 78 47.4
BcaB02g07039 Brassica carinata HOM05D007355 ORTHO05D009343 7.4e-09 64.3 70 57.1
BcaC08g45561 Brassica carinata HOM05D007355 ORTHO05D009343 8.1e-08 60.8 70 52.9
C06p32480 Brassica napus HOM05D007355 ORTHO05D009343 1.8e-07 59.7 70 52.9
BolC6t38371H Brassica oleracea HOM05D007355 ORTHO05D009343 1.8e-07 59.7 70 52.9
Migut.C00824 Erythranthe guttata HOM05D007355 ORTHO05D009343 1.8e-07 59.7 103 41.7
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 6.9e-07 57.8 79 46.8
BcaB03g14350 Brassica carinata HOM05D007355 ORTHO05D009343 1.2e-06 57.0 72 45.8


User provided reference genes

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