Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015956 Lotus japonicus HOM05D004047 ORTHO05D004772 0.0e+00 1233.8 659 100.0
Glyma.06G025800 Glycine max HOM05D004047 ORTHO05D004772 1.8e-186 656.8 853 51.8
Phvul.009G015200 Phaseolus vulgaris HOM05D004047 ORTHO05D004772 2.5e-175 619.8 839 50.9
VMungo1309G2404 Vigna mungo HOM05D004047 ORTHO05D004772 1.3e-173 614.0 839 49.7
Lalb_Chr08g0246131 Lupinus albus HOM05D004047 ORTHO05D004772 1.3e-163 580.9 782 48.8
Lalb_Chr11g0062011 Lupinus albus HOM05D004047 ORTHO05D004772 9.1e-162 574.7 794 49.1
Glyma.04G026000 Glycine max HOM05D004047 ORTHO05D004772 7.0e-154 548.5 597 57.0
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea HOM05D004047 ORTHO05D004772 2.1e-150 537.0 748 49.7
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea HOM05D004047 ORTHO05D004772 2.0e-148 530.4 748 49.7
Lj5g0017583 Lotus japonicus HOM05D004047 ORTHO05D004772 2.7e-134 483.4 840 43.3
Lalb_Chr14g0369751 Lupinus albus HOM05D004047 ORTHO05D004772 3.6e-126 456.4 812 44.0
Medtr1g023760 Medicago truncatula HOM05D004047 ORTHO05D004772 1.3e-123 448.0 808 44.2
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea HOM05D004047 ORTHO05D004772 2.7e-121 440.3 779 42.9
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea HOM05D004047 ORTHO05D004772 1.2e-118 431.4 779 42.5
Psat6g004160 Pisum sativum HOM05D004047 ORTHO05D004772 5.8e-116 422.5 812 43.1
Cfa013920 Carpinus fangiana HOM05D004047 ORTHO05D004772 1.2e-113 414.8 813 41.3
Dinv31823 Davidia involucrata HOM05D004047 ORTHO05D004772 1.6e-113 414.5 851 40.0
Ca_13402_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 9.8e-108 395.2 794 40.8
Ca_13415_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 9.8e-108 395.2 794 40.8
Ca_29786_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.3e-107 394.8 790 41.0
Duzib041G0005 Durio zibethinus HOM05D004047 ORTHO05D004772 1.1e-101 375.2 835 38.0
QL02p010984 Quercus lobata HOM05D004047 ORTHO05D004772 1.2e-100 371.7 845 38.2
Duzib093G0674 Durio zibethinus HOM05D004047 ORTHO05D004772 2.0e-100 370.9 865 37.6
Atru.chr13.329 Acer truncatum HOM05D004047 ORTHO05D004772 3.4e-100 370.2 847 38.0
Potri.002G025200 Populus trichocarpa HOM05D004047 ORTHO05D004772 5.8e-100 369.4 832 39.2
Manes.18G016100 Manihot esculenta HOM05D004047 ORTHO05D004772 1.4e-98 364.8 816 39.6
TWI12G0119 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 1.0e-96 358.6 810 39.4
TWI56G0272 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 3.9e-96 356.7 817 38.7
Ciclev10000295m.g Citrus clementina HOM05D004047 ORTHO05D004772 8.6e-96 355.5 838 36.5
Gorai.002G124800 Gossypium raimondii HOM05D004047 ORTHO05D004772 1.1e-95 355.1 860 35.9
Prupe.1G369000 Prunus persica HOM05D004047 ORTHO05D004772 1.9e-95 354.4 823 38.3
Gohir.D01G099500 Gossypium hirsutum HOM05D004047 ORTHO05D004772 5.6e-95 352.8 860 35.8
Nn5g29267 Nelumbo nucifera HOM05D004047 ORTHO05D004772 6.2e-94 349.4 821 36.9
Potri.005G236200 Populus trichocarpa HOM05D004047 ORTHO05D004772 1.1e-93 348.6 818 37.5
CANSAT25G0097 Cannabis sativa HOM05D004047 ORTHO05D004772 1.8e-93 347.8 867 35.8
Gohir.A01G112700 Gossypium hirsutum HOM05D004047 ORTHO05D004772 5.2e-93 346.3 854 35.8
CiPaw.08G064100 Carya illinoinensis HOM05D004047 ORTHO05D004772 1.7e-91 341.3 470 50.6
Haze_22603 Corylus avellana HOM05D004047 ORTHO05D004772 2.2e-91 340.9 811 38.0
Duzib116G0032 Durio zibethinus HOM05D004047 ORTHO05D004772 4.2e-90 336.7 856 36.2
Thecc.08G040700 Theobroma cacao HOM05D004047 ORTHO05D004772 7.1e-90 335.9 520 46.9
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 1.2e-89 335.1 859 36.7
Oeu054711.1 Olea europaea HOM05D004047 ORTHO05D004772 4.6e-89 333.2 809 37.5
Nn6g32284 Nelumbo nucifera HOM05D004047 ORTHO05D004772 5.1e-88 329.7 818 36.4
CSS0029692 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 8.7e-88 328.9 814 35.9
TAR381G0884 Trochodendron aralioides HOM05D004047 ORTHO05D004772 8.7e-88 328.9 815 36.1
MD15G1014800 Malus domestica HOM05D004047 ORTHO05D004772 1.6e-86 324.7 746 38.9
Cpa.g.sc26.21 Carica papaya HOM05D004047 ORTHO05D004772 3.6e-86 323.6 900 34.1
CsaV3_3G045640 Cucumis sativus L. HOM05D004047 ORTHO05D004772 3.6e-86 323.6 817 36.1
Aqoxy6G02326 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 4.8e-86 323.2 850 36.0
RcHm_v2.0_Chr6g0302451 Rosa chinensis HOM05D004047 ORTHO05D004772 2.2e-83 314.3 797 37.0
MD08G1015800 Malus domestica HOM05D004047 ORTHO05D004772 8.4e-83 312.4 491 47.0
Eucgr.F01629 Eucalyptus grandis HOM05D004047 ORTHO05D004772 7.1e-82 309.3 865 35.3
FAN15G3510 Fragaria x ananassa HOM05D004047 ORTHO05D004772 9.3e-82 308.9 851 35.4
DCAR_022438 Daucus carota HOM05D004047 ORTHO05D004772 4.6e-81 306.6 788 36.8
Rhsim07G0245700 Rhododendron simsii HOM05D004047 ORTHO05D004772 1.7e-80 304.7 818 34.5
Hma1.2p1_2476F.1_g322840 Hydrangea macrophylla HOM05D004047 ORTHO05D004772 8.7e-80 302.4 805 35.9
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 7.3e-79 299.3 837 34.6
Gohir.A05G188000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 9.6e-79 298.9 915 32.2
Actinidia16963 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.8e-78 297.4 799 36.5
Gorai.009G196200 Gossypium raimondii HOM05D004047 ORTHO05D004772 3.6e-78 297.0 915 32.5
CSS0011131 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 8.1e-78 295.8 943 31.5
FAN27G1251 Fragaria x ananassa HOM05D004047 ORTHO05D004772 1.8e-77 294.7 854 34.7
Actinidia15402 Actinidia chinensis HOM05D004047 ORTHO05D004772 4.0e-77 293.5 806 34.7
FvH4_2g38820 Fragaria vesca HOM05D004047 ORTHO05D004772 6.9e-77 292.7 855 34.6
TPR.G34366 Trifolium pratense HOM05D004047 ORTHO05D004772 9.0e-77 292.4 745 37.6
Cc10_g01950 Coffea canephora HOM05D004047 ORTHO05D004772 1.2e-76 292.0 812 33.0
Peaxi162Scf00287g01716 Petunia axillaris HOM05D004047 ORTHO05D004772 2.2e-75 287.7 876 33.9
Sabra05G0182600 Salix brachista HOM05D004047 ORTHO05D004772 2.2e-75 287.7 806 34.1
Gohir.D05G191000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 2.9e-75 287.3 914 32.1
ClCG05G018530 Citrullus lanatus HOM05D004047 ORTHO05D004772 4.9e-75 286.6 813 33.8
TAR376G1182 Trochodendron aralioides HOM05D004047 ORTHO05D004772 2.4e-74 284.3 932 31.5
DCAR_009937 Daucus carota HOM05D004047 ORTHO05D004772 2.1e-73 281.2 764 35.9
PGR083G1283 Punica granatum HOM05D004047 ORTHO05D004772 2.7e-73 280.8 851 33.4
CAN.G1271.11 Capsicum annuum HOM05D004047 ORTHO05D004772 1.1e-71 275.4 889 33.5
Sed0024056 Sechium edule HOM05D004047 ORTHO05D004772 1.1e-71 275.4 829 34.6
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 1.5e-71 275.0 820 32.4
MELO3C003773.2 Cucumis melo HOM05D004047 ORTHO05D004772 1.6e-70 271.6 526 42.0
MBI05_g26515_MAGBIO Magnolia biondii HOM05D004047 ORTHO05D004772 4.8e-70 270.0 835 32.2
PSO541G1521 Papaver somniferum HOM05D004047 ORTHO05D004772 4.8e-70 270.0 824 32.2
Nitab4.5_0005185g0030 Nicotiana tabacum HOM05D004047 ORTHO05D004772 8.1e-70 269.2 884 33.3
Gohir.A06G005600 Gossypium hirsutum HOM05D004047 ORTHO05D004772 4.0e-69 266.9 731 36.0
PGSC0003DMG400003722 Solanum tuberosum HOM05D004047 ORTHO05D004772 1.5e-68 265.0 879 32.8
PSO675G6151 Papaver somniferum HOM05D004047 ORTHO05D004772 2.6e-68 264.2 824 31.8
Gorai.010G005800 Gossypium raimondii HOM05D004047 ORTHO05D004772 2.2e-67 261.2 685 35.6
MELO3C010997.2 Cucumis melo HOM05D004047 ORTHO05D004772 4.9e-67 260.0 862 31.9
Gohir.D06G001400 Gossypium hirsutum HOM05D004047 ORTHO05D004772 8.4e-67 259.2 709 35.4
Sopen04g034820 Solanum pennellii HOM05D004047 ORTHO05D004772 5.5e-66 256.5 873 32.5
Lj4A794G38 Lonicera japonica HOM05D004047 ORTHO05D004772 9.3e-66 255.8 748 36.4
Solyc04g081210.4 Solanum lycopersicum HOM05D004047 ORTHO05D004772 1.2e-65 255.4 874 32.4
CsaV3_2G029380 Cucumis sativus L. HOM05D004047 ORTHO05D004772 2.1e-65 254.6 855 31.3
EL10Ac1g02250 Beta vulgaris HOM05D004047 ORTHO05D004772 1.8e-64 251.5 878 32.0
Peaxi162Scf00186g00119 Petunia axillaris HOM05D004047 ORTHO05D004772 3.0e-64 250.8 740 34.2
MSTRG.25224 Avicennia marina HOM05D004047 ORTHO05D004772 5.1e-64 250.0 814 34.2
Sc02g0008420 Simmondsia chinensis HOM05D004047 ORTHO05D004772 4.3e-63 246.9 824 32.5
Migut.C00820 Erythranthe guttata HOM05D004047 ORTHO05D004772 4.8e-62 243.4 792 34.3
CDE02G3574 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 8.2e-62 242.7 778 31.2
HanXRQChr04g0101151 Helianthus annuus HOM05D004047 ORTHO05D004772 1.2e-60 238.8 728 34.5
Aqoxy5G01461 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 2.0e-60 238.0 864 31.6
Nitab4.5_0001242g0060 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.0e-59 235.7 786 33.8
Sed0015722 Sechium edule HOM05D004047 ORTHO05D004772 1.7e-59 235.0 817 32.4
Hund05219 Selenicereus undatus HOM05D004047 ORTHO05D004772 1.7e-59 235.0 598 37.3
Oeu027553.1 Olea europaea HOM05D004047 ORTHO05D004772 2.5e-58 231.1 637 35.9
Ah.11g039490 Amaranthus hybridus HOM05D004047 ORTHO05D004772 4.6e-57 226.9 828 30.7
ECA238G1430 Erigeron canadensis HOM05D004047 ORTHO05D004772 1.8e-56 224.9 706 34.0
SGA_v2.0_scaffold92G28267 Striga asiatica HOM05D004047 ORTHO05D004772 1.1e-55 222.2 774 34.5
HanXRQChr13g0387331 Helianthus annuus HOM05D004047 ORTHO05D004772 9.7e-55 219.2 877 29.4
Lsat_1_v5_gn_8_31420 Lactuca sativa HOM05D004047 ORTHO05D004772 3.7e-54 217.2 776 31.8
SGA_v2.0_scaffold11G05888 Striga asiatica HOM05D004047 ORTHO05D004772 6.9e-53 213.0 786 33.3
AUR62035431 Chenopodium quinoa HOM05D004047 ORTHO05D004772 1.5e-52 211.8 458 42.1
Nitab4.5_0005489g0020 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.5e-52 211.8 821 31.7
SalBow7G0720 Salvia bowleyana HOM05D004047 ORTHO05D004772 2.9e-51 207.6 893 28.8
HanXRQChr14g0431291 Helianthus annuus HOM05D004047 ORTHO05D004772 1.4e-50 205.3 706 32.4
Dinv39497 Davidia involucrata HOM05D004047 ORTHO05D004772 7.9e-49 199.5 183 66.1
vmacro04336 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 2.3e-48 198.0 678 31.6
Oeu007049.1 Olea europaea HOM05D004047 ORTHO05D004772 3.0e-48 197.6 407 41.0
AUR62035714 Chenopodium quinoa HOM05D004047 ORTHO05D004772 3.9e-48 197.2 698 33.2
Actinidia37973 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.1e-47 195.7 536 33.8
ECA233G3940 Erigeron canadensis HOM05D004047 ORTHO05D004772 9.1e-45 186.0 873 28.9
CDE04G1192 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 1.2e-44 185.7 760 28.8
Sed0015788 Sechium edule HOM05D004047 ORTHO05D004772 2.2e-43 181.4 510 36.1
HanXRQChr12g0367641 Helianthus annuus HOM05D004047 ORTHO05D004772 3.8e-43 180.6 845 28.8
Dinv39496 Davidia involucrata HOM05D004047 ORTHO05D004772 3.6e-41 174.1 524 34.2
GSVIVG01009858001 Vitis vinifera HOM05D004047 ORTHO05D004772 6.1e-41 173.3 466 36.5
THA.LOC104811392 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 5.1e-40 170.2 814 29.9
SalBow8G2734 Salvia bowleyana HOM05D004047 ORTHO05D004772 4.4e-39 167.2 808 29.1
SHI08087 Sapria himalayana HOM05D004047 ORTHO05D004772 8.2e-38 162.9 660 30.2
HPP92_001560 Vanilla planifolia HOM05D004047 ORTHO05D004772 1.2e-36 159.1 820 26.8
THA.LOC104813799 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 2.0e-36 158.3 840 28.2
PSO210G3933 Papaver somniferum HOM05D004047 ORTHO05D004772 4.5e-36 157.1 726 27.3
A08p29630 Brassica napus HOM05D004047 ORTHO05D004772 1.0e-35 156.0 804 29.6
PSO170G4872 Papaver somniferum HOM05D004047 ORTHO05D004772 1.1e-34 152.5 741 27.1
BolC8t49616H Brassica oleracea HOM05D004047 ORTHO05D004772 1.5e-34 152.1 780 28.1
BcaC07g39006 Brassica carinata HOM05D004047 ORTHO05D004772 1.9e-34 151.8 784 27.8
Migut.N03142 Erythranthe guttata HOM05D004047 ORTHO05D004772 5.5e-34 150.2 665 29.9
unitig_8.g4918 Utricularia gibba HOM05D004047 ORTHO05D004772 7.2e-34 149.8 750 28.5
BcaC05g25881 Brassica carinata HOM05D004047 ORTHO05D004772 6.1e-33 146.7 708 29.7
C05p18380 Brassica napus HOM05D004047 ORTHO05D004772 6.1e-33 146.7 708 29.7
BolC5t30548H Brassica oleracea HOM05D004047 ORTHO05D004772 6.1e-33 146.7 708 29.7
C08p19780 Brassica napus HOM05D004047 ORTHO05D004772 8.0e-33 146.4 765 27.6
AL1G32600 Arabidopsis lyrata HOM05D004047 ORTHO05D004772 1.0e-32 146.0 833 28.1
Lsat_1_v5_gn_2_11701 Lactuca sativa HOM05D004047 ORTHO05D004772 2.3e-32 144.8 711 28.1
A06p16070 Brassica napus HOM05D004047 ORTHO05D004772 1.5e-31 142.1 656 29.1
Actinidia29790 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.0e-31 141.7 521 29.0
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 2.0e-31 141.7 618 29.8
Sp1g17670 Schrenkiella parvula HOM05D004047 ORTHO05D004772 4.4e-31 140.6 825 27.5
BraA06t24713Z Brassica rapa HOM05D004047 ORTHO05D004772 1.7e-30 138.7 660 29.5
Thhalv10006839m.g Eutrema salsugineum HOM05D004047 ORTHO05D004772 3.7e-30 137.5 847 26.2
Os04g0663100 Oryza sativa ssp. japonica HOM05D004047 ORTHO05D004772 6.3e-30 136.7 554 31.8
THA.LOC104806899 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 1.8e-29 135.2 682 30.6
CARHR020370 Cardamine hirsuta HOM05D004047 ORTHO05D004772 2.4e-29 134.8 823 28.4
BcaB07g32005 Brassica carinata HOM05D004047 ORTHO05D004772 4.1e-29 134.0 452 34.3
Zm00001eb432990 Zea mays HOM05D004047 ORTHO05D004772 7.0e-29 133.3 658 28.6
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 1.2e-28 132.5 836 26.3
AT1G19870 Arabidopsis thaliana HOM05D004047 ORTHO05D004772 7.7e-28 129.8 836 27.5
BcaB03g12894 Brassica carinata HOM05D004047 ORTHO05D004772 8.5e-27 126.3 789 27.2
ATR0147G010 Amborella trichopoda HOM05D004047 ORTHO05D004772 4.2e-26 124.0 511 30.1
Carub.0001s1939 Capsella rubella HOM05D004047 ORTHO05D004772 1.8e-24 118.6 840 26.9
Zm00001eb067350 Zea mays HOM05D004047 ORTHO05D004772 4.0e-24 117.5 527 30.0
unitig_578.g16089 Utricularia gibba HOM05D004047 ORTHO05D004772 2.3e-16 91.7 75 64.0
unitig_578.g16088 Utricularia gibba HOM05D004047 ORTHO05D004772 2.8e-14 84.7 462 26.4
SEGI_07284 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 2.3e-11 75.1 132 40.2
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 2.5e-10 71.6 59 62.7
Medtr1g023925 Medicago truncatula HOM05D004047 ORTHO05D004772 2.8e-09 68.2 109 46.8
Psat6g243160 Pisum sativum HOM05D004047 ORTHO05D004772 3.0e-08 64.7 86 50.0
Psat1g160560 Pisum sativum HOM05D004047 ORTHO05D004772 5.2e-08 63.9 86 50.0
vmacro04323 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 1.2e-07 62.8 165 27.9
Psat3g033200 Pisum sativum HOM05D000528 ORTHO05D011662 1.5e-07 62.4 82 45.1
CSS0030269 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D004772 3.4e-07 61.2 79 40.5
HPP92_020925 Vanilla planifolia HOM05D004047 ORTHO05D004772 6.4e-06 57.0 658 24.3


User provided reference genes

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