Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 3.7e-263 911.0 463 100.0
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.4e-222 776.2 466 86.1
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 1.9e-219 765.8 464 84.7
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 1.8e-217 759.2 466 84.8
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 8.5e-215 750.4 467 83.5
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 1.6e-213 746.1 465 82.8
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 5.9e-208 727.6 491 78.0
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 1.4e-206 723.0 467 81.2
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 5.0e-199 698.0 498 73.9
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 6.5e-199 697.6 501 74.3
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 3.7e-186 655.2 475 73.9
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.6e-184 649.8 465 71.2
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 3.8e-183 645.2 466 70.2
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 1.9e-182 642.9 466 71.2
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 7.2e-182 641.0 467 70.2
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 1.4e-180 636.7 466 70.6
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 5.2e-180 634.8 467 69.6
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 6.8e-180 634.4 471 69.9
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 7.5e-179 630.9 466 69.5
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.7e-178 628.6 469 70.1
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 4.9e-178 628.2 469 69.9
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 6.3e-178 627.9 466 70.0
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.4e-177 624.8 466 69.3
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.6e-176 623.2 465 68.6
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 4.5e-176 621.7 467 68.7
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.0e-175 620.5 466 68.9
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.3e-175 620.2 466 68.9
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-174 617.1 466 68.5
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 4.3e-174 615.1 466 68.5
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 4.3e-174 615.1 468 68.8
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.4e-172 610.1 466 68.5
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.8e-172 609.8 466 68.0
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 6.8e-172 607.8 465 67.5
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 7.5e-171 604.4 429 71.8
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 1.3e-170 603.6 467 67.2
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 5.4e-169 598.2 467 67.7
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 3.0e-167 592.4 497 63.8
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 3.9e-167 592.0 466 67.0
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 1.6e-165 586.6 468 67.3
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 6.2e-165 584.7 467 66.0
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 4.4e-163 578.6 468 64.7
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 2.4e-161 572.8 491 62.7
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 7.0e-161 571.2 466 64.6
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 1.6e-160 570.1 467 63.2
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 2.7e-160 569.3 468 64.3
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 1.1e-158 563.9 468 63.7
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.9e-158 563.1 466 63.5
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 8.1e-157 557.8 466 63.3
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 4.0e-156 555.4 466 61.8
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 5.2e-156 555.1 467 64.0
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 4.4e-155 552.0 470 62.8
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 3.7e-154 548.9 489 60.7
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 4.9e-154 548.5 490 60.8
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 7.8e-152 541.2 473 61.9
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.7e-151 540.0 508 60.0
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.3e-151 539.7 522 56.9
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 3.9e-151 538.9 467 61.7
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 5.6e-150 535.0 474 59.9
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 4.7e-149 531.9 532 58.3
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 2.3e-148 529.6 441 64.6
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 7.6e-147 524.6 469 60.6
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 8.4e-146 521.2 479 59.3
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.2e-144 517.3 467 60.4
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 2.3e-143 513.1 481 59.5
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 5.1e-143 511.9 509 55.6
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.6e-141 506.9 490 58.4
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 1.1e-137 494.2 498 56.4
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.4e-137 493.8 481 58.4
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.1e-134 484.2 517 54.2
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 9.6e-134 481.1 478 58.4
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 3.6e-133 479.2 485 55.7
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.8e-133 478.8 478 58.2
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 4.8e-133 478.8 483 59.2
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 6.2e-133 478.4 462 57.6
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 9.0e-132 474.6 488 57.6
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 1.5e-131 473.8 479 58.0
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 2.6e-131 473.0 477 56.8
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 2.6e-131 473.0 352 71.3
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 7.6e-131 471.5 544 52.6
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 9.9e-131 471.1 465 58.3
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.3e-130 470.7 503 52.9
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 2.2e-130 469.9 468 56.4
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 2.9e-130 469.5 544 52.4
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 3.8e-130 469.2 478 55.2
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 6.4e-130 468.4 478 57.3
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 2.1e-128 463.4 351 70.4
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 5.1e-127 458.8 369 66.9
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 6.6e-127 458.4 480 56.0
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 7.4e-126 454.9 535 50.7
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 9.6e-126 454.5 487 55.4
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 4.8e-125 452.2 556 50.2
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 2.4e-124 449.9 483 53.0
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.2e-123 447.6 414 58.5
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 7.6e-123 444.9 487 54.2
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.7e-122 443.7 494 54.0
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.7e-122 443.7 446 57.2
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 2.3e-119 433.3 473 55.6
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 4.3e-118 429.1 510 52.7
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 3.1e-116 422.9 557 46.0
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.1e-116 422.9 516 50.4
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 4.0e-116 422.5 520 50.8
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 1.5e-115 420.6 474 52.7
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 1.0e-111 407.9 488 51.2
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 1.4e-108 397.5 429 53.6
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.4e-105 387.5 317 65.3
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.9e-105 387.1 316 63.3
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 4.8e-93 345.9 259 71.8
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 5.0e-74 282.7 360 46.4
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 2.3e-71 273.9 220 67.7
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 5.2e-71 272.7 255 61.2
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 3.4e-70 270.0 220 66.8
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 3.5e-67 260.0 219 65.8
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 4.5e-67 259.6 264 56.4
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 7.2e-65 252.3 174 71.8
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 4.9e-61 239.6 215 57.2
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 9.2e-60 235.3 484 37.0
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 7.8e-51 205.7 484 34.9
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 5.6e-49 199.5 409 39.1
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.2e-48 198.4 437 36.8
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 6.8e-47 192.6 366 38.8
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 4.0e-39 166.8 465 29.2
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 6.8e-39 166.0 102 79.4
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.7e-37 161.4 490 31.4
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.4e-36 157.5 447 32.9
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 5.1e-34 149.8 436 31.9
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 7.6e-30 136.0 181 43.6
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 1.6e-24 118.2 154 44.8
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 2.8e-24 117.5 447 28.4
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.5e-22 111.7 115 48.7
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 3.8e-21 107.1 137 43.1
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.1e-16 91.3 82 64.6
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 1.0e-10 72.4 41 78.0
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 2.1e-08 64.7 92 52.2
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.6e-06 57.8 144 31.9
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 4.5e-06 57.0 264 28.8
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 4.5e-06 57.0 164 29.3
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 9.9e-06 55.8 201 28.9


User provided reference genes

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