Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 5.0e-94 347.8 182 100.0
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 2.3e-75 285.8 190 83.2
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 8.8e-75 283.9 186 80.1
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 1.7e-73 279.6 185 81.1
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 9.1e-72 273.9 185 82.7
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 1.7e-70 269.6 183 80.9
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 8.5e-70 267.3 178 82.0
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 6.8e-67 257.7 152 88.2
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 2.6e-66 255.8 166 82.5
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 3.1e-64 248.8 187 73.8
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 9.2e-64 247.3 181 75.1
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 1.6e-63 246.5 187 73.3
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 2.7e-63 245.7 175 77.1
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 5.6e-61 238.0 189 72.0
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 5.6e-61 238.0 182 70.3
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 7.3e-61 237.7 193 68.4
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 4.7e-60 235.0 188 69.1
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 1.4e-59 233.4 167 74.3
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 1.8e-59 233.0 195 67.7
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 1.8e-59 233.0 199 67.8
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 2.3e-59 232.6 181 69.6
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 2.3e-59 232.6 196 66.3
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 3.0e-59 232.3 170 74.7
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 6.8e-59 231.1 186 68.3
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 6.8e-59 231.1 178 70.2
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 8.9e-59 230.7 188 68.1
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 3.4e-58 228.8 184 68.5
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 4.4e-58 228.4 182 68.1
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 1.1e-56 223.8 174 69.0
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 1.8e-56 223.0 180 67.2
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 1.8e-56 223.0 185 65.9
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 2.4e-56 222.6 169 72.2
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 2.4e-56 222.6 183 67.2
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 3.2e-56 222.2 188 64.4
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 5.4e-56 221.5 184 65.2
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 7.0e-56 221.1 195 66.2
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 7.0e-56 221.1 184 65.2
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 7.0e-56 221.1 179 68.2
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 7.0e-56 221.1 174 67.2
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 1.6e-55 219.9 185 65.9
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 2.7e-55 219.2 174 69.5
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 2.7e-55 219.2 192 65.1
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 3.5e-55 218.8 175 68.0
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 3.5e-55 218.8 164 75.0
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 4.6e-55 218.4 185 66.5
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 4.6e-55 218.4 192 63.0
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 7.8e-55 217.6 178 66.3
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 1.0e-54 217.2 180 65.0
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 1.7e-54 216.5 179 67.6
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 2.3e-54 216.1 182 65.4
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 3.0e-54 215.7 149 78.5
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 3.0e-54 215.7 174 65.5
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 3.0e-54 215.7 174 65.5
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 5.0e-54 214.9 178 65.2
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 5.0e-54 214.9 177 66.1
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 6.6e-54 214.5 175 65.7
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 1.9e-53 213.0 183 62.8
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 2.5e-53 212.6 189 63.5
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 4.3e-53 211.8 149 77.2
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 4.3e-53 211.8 189 63.5
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 4.3e-53 211.8 195 61.5
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 5.6e-53 211.5 185 63.8
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 9.5e-53 210.7 180 64.4
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 1.6e-52 209.9 191 64.9
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 2.8e-52 209.1 182 61.5
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 3.6e-52 208.8 199 58.3
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.6e-52 208.8 189 63.0
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 3.6e-52 208.8 209 61.2
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 4.7e-52 208.4 198 61.6
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 4.7e-52 208.4 184 63.6
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 6.2e-52 208.0 175 62.9
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 1.8e-51 206.5 183 62.8
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.8e-51 206.5 194 61.9
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.8e-51 206.5 181 63.5
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 5.2e-51 204.9 181 63.5
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 8.9e-51 204.1 194 61.3
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 8.9e-51 204.1 171 65.5
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 1.5e-50 203.4 231 54.1
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.5e-50 203.4 199 61.3
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 2.0e-50 203.0 181 62.4
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 2.0e-50 203.0 165 67.3
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 5.8e-50 201.4 195 61.0
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 7.5e-50 201.1 122 82.8
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 2.9e-49 199.1 184 61.4
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 3.7e-49 198.7 171 64.9
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 3.7e-49 198.7 168 62.5
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 6.4e-49 198.0 187 64.7
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 1.4e-48 196.8 196 60.2
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 2.0e-47 193.0 197 60.4
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 6.0e-47 191.4 201 56.2
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 7.8e-47 191.0 196 58.7
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 7.8e-47 191.0 111 82.9
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 1.0e-46 190.7 180 57.8
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 1.3e-46 190.3 110 83.6
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 2.3e-46 189.5 181 59.1
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 3.0e-46 189.1 138 69.6
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 3.9e-46 188.7 109 83.5
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 8.6e-46 187.6 110 81.8
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.1e-45 187.2 109 81.7
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 2.5e-45 186.0 105 84.8
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 4.3e-45 185.3 125 74.4
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.2e-44 183.7 184 58.2
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 3.1e-43 179.1 161 60.2
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 6.8e-43 177.9 175 57.1
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 2.6e-42 176.0 115 76.5
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 2.6e-42 176.0 181 55.8
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 1.2e-39 167.2 173 58.4
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 1.0e-38 164.1 147 66.0
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 9.5e-37 157.5 92 81.5
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 8.1e-36 154.5 92 80.4
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 5.2e-35 151.8 175 52.0
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 6.8e-35 151.4 115 71.3
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 4.4e-34 148.7 103 68.0
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 4.4e-34 148.7 124 62.9
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 3.8e-33 145.6 92 79.3
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 1.4e-32 143.7 125 54.4
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.2e-28 130.6 100 60.0
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.6e-28 130.2 90 68.9
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 6.2e-28 128.3 126 50.8
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 5.2e-27 125.2 70 82.9
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 2.0e-26 123.2 99 57.6
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 1.3e-25 120.6 97 55.7
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 8.4e-25 117.9 137 56.2
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 4.2e-24 115.5 70 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 1.7e-22 110.2 81 64.2
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 2.3e-22 109.8 124 47.6
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 9.0e-19 97.8 92 55.4
Medtr4g010890 Medicago truncatula HOM05D006274 ORTHO05D007782 7.1e-08 61.6 55 67.3
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 1.2e-07 60.8 85 34.1


User provided reference genes

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