Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015629 Lotus japonicus HOM05D016094 ORTHO05D011758 7.3e-143 510.8 301 100.0
Medtr8g101290 Medicago truncatula HOM05D016094 ORTHO05D011758 1.9e-82 310.1 302 63.6
Ca_17428_v3 Cicer arietinum L. HOM05D016094 ORTHO05D011758 8.3e-78 294.7 328 61.3
Ca_17437_v3 Cicer arietinum L. HOM05D016094 ORTHO05D011758 8.3e-78 294.7 328 61.3
TPR.G25477 Trifolium pratense HOM05D016094 ORTHO05D011758 5.5e-74 282.0 303 60.1
arahy.Tifrunner.gnm1.ann1.J3TRVX Arachis hypogaea HOM05D016094 ORTHO05D011758 2.4e-61 240.0 304 47.0
Psat7g021040 Pisum sativum HOM05D016094 ORTHO05D011758 1.7e-59 233.8 256 58.6
Lalb_Chr03g0039651 Lupinus albus HOM05D016094 ORTHO05D011758 2.0e-55 220.3 349 51.0
Glyma.01G077900 Glycine max HOM05D016094 ORTHO05D011758 9.5e-50 201.4 243 49.4
QL08p052749 Quercus lobata HOM05D032978 ORTHO05D011758 1.8e-16 90.9 125 40.8
PGR004G1896 Punica granatum HOM05D001509 ORTHO05D001361 4.0e-16 89.7 198 30.3
Cfa001748 Carpinus fangiana HOM05D001509 ORTHO05D011758 2.6e-15 87.0 301 34.2
CiPaw.01G263400 Carya illinoinensis HOM05D001509 ORTHO05D011758 7.6e-15 85.5 301 28.9
Gohir.D13G097800 Gossypium hirsutum HOM05D001509 ORTHO05D001361 3.8e-14 83.2 319 30.4
Prupe.6G248600 Prunus persica HOM05D001509 ORTHO05D001361 8.4e-14 82.0 316 27.5
TWI74G0580 Tripterygium wilfordii HOM05D001509 ORTHO05D001361 8.4e-14 82.0 315 27.9
Nn2g10513 Nelumbo nucifera HOM05D001509 ORTHO05D001361 1.1e-13 81.6 197 30.5
GSVIVG01025601001 Vitis vinifera HOM05D001509 ORTHO05D001361 1.4e-13 81.3 175 32.0
AT2G37400 Arabidopsis thaliana HOM05D001509 ORTHO05D001361 1.9e-13 80.9 202 29.7
Gohir.A04G079100 Gossypium hirsutum HOM05D001509 ORTHO05D001361 2.5e-13 80.5 203 32.5
Manes.08G075200 Manihot esculenta HOM05D001509 ORTHO05D001361 2.5e-13 80.5 127 36.2
CARHR132190 Cardamine hirsuta HOM05D001509 ORTHO05D001361 3.2e-13 80.1 202 30.7
Gorai.001G250200 Gossypium raimondii HOM05D001509 ORTHO05D001361 3.2e-13 80.1 315 28.9
AL4G33790 Arabidopsis lyrata HOM05D001509 ORTHO05D001361 5.5e-13 79.3 202 31.2
Sp4g19720 Schrenkiella parvula HOM05D001509 ORTHO05D001361 7.1e-13 79.0 201 30.8
Thhalv10010528m.g Eutrema salsugineum HOM05D001509 ORTHO05D001361 9.3e-13 78.6 200 31.0
Sabra16G0088000 Salix brachista HOM05D001509 ORTHO05D001361 1.6e-12 77.8 205 30.2
Duzib128G0996 Durio zibethinus HOM05D001509 ORTHO05D001361 2.1e-12 77.4 314 27.7
FAN05G2100 Fragaria x ananassa HOM05D001509 ORTHO05D001361 2.7e-12 77.0 308 27.6
Gohir.D04G118300 Gossypium hirsutum HOM05D001509 ORTHO05D001361 2.7e-12 77.0 318 28.6
Gorai.009G423400 Gossypium raimondii HOM05D001509 ORTHO05D001361 2.7e-12 77.0 318 28.6
AL5G34490 Arabidopsis lyrata HOM05D001509 ORTHO05D001361 3.5e-12 76.6 200 30.5
AT3G53560 Arabidopsis thaliana HOM05D001509 ORTHO05D001361 4.6e-12 76.3 200 30.5
Thhalv10017513m.g Eutrema salsugineum HOM05D001509 ORTHO05D001361 4.6e-12 76.3 202 31.7
Aa31LG5G22810 Aethionema arabicum HOM05D001509 ORTHO05D001361 6.0e-12 75.9 204 30.4
A04p28550 Brassica napus HOM05D001509 ORTHO05D001361 6.0e-12 75.9 201 31.3
BraA04t18333Z Brassica rapa HOM05D001509 ORTHO05D001361 6.0e-12 75.9 201 31.3
Potri.006G213600 Populus trichocarpa HOM05D001509 ORTHO05D001361 6.0e-12 75.9 206 28.6
BcaB02g07775 Brassica carinata HOM05D001509 ORTHO05D001361 1.0e-11 75.1 198 30.3
CANSAT80G1471 Cannabis sativa HOM05D001509 ORTHO05D001361 1.0e-11 75.1 200 31.5
FAN14G0342 Fragaria x ananassa HOM05D001509 ORTHO05D001361 1.0e-11 75.1 308 27.3
Manes.09G085800 Manihot esculenta HOM05D001509 ORTHO05D001361 1.0e-11 75.1 316 26.3
TAR633G2683 Trochodendron aralioides HOM05D001509 ORTHO05D001361 1.0e-11 75.1 311 24.4
Potri.016G080000 Populus trichocarpa HOM05D001509 ORTHO05D001361 1.3e-11 74.7 203 30.0
Carub.0005s2013 Capsella rubella HOM05D001509 ORTHO05D001361 1.8e-11 74.3 312 26.3
Dinv35652 Davidia involucrata HOM05D001509 ORTHO05D001361 1.8e-11 74.3 315 28.6
FvH4_6g14610 Fragaria vesca HOM05D001509 ORTHO05D001361 1.8e-11 74.3 308 27.3
Sopen10g034030 Solanum pennellii HOM05D001509 ORTHO05D001361 1.8e-11 74.3 201 29.4
BcaB06g28988 Brassica carinata HOM05D001509 ORTHO05D001361 2.3e-11 73.9 201 29.4
Carub.0004s1932 Capsella rubella HOM05D001509 ORTHO05D001361 2.3e-11 73.9 201 28.9
Eucgr.A01225 Eucalyptus grandis HOM05D001509 ORTHO05D001361 2.3e-11 73.9 127 34.6
CSS0017481 Camellia sinensis var. sinensis HOM05D001509 ORTHO05D001361 3.0e-11 73.6 305 25.2
Nn2g12863 Nelumbo nucifera HOM05D001509 ORTHO05D001361 3.0e-11 73.6 321 27.4
Sabra16G0085900 Salix brachista HOM05D001509 ORTHO05D001361 3.0e-11 73.6 320 26.9
PGSC0003DMG400023906 Solanum tuberosum HOM05D001509 ORTHO05D001361 3.0e-11 73.6 253 27.3
FAN02G2018 Fragaria x ananassa HOM05D001509 ORTHO05D001361 3.9e-11 73.2 308 27.3
CARHR163460 Cardamine hirsuta HOM05D001509 ORTHO05D001361 5.1e-11 72.8 198 32.8
Sc20g0004440 Simmondsia chinensis HOM05D001509 ORTHO05D001361 5.1e-11 72.8 201 29.4
BolC6t37341H Brassica oleracea HOM05D000434 ORTHO05D001361 6.7e-11 72.4 198 29.8
Sabra06G0164500 Salix brachista HOM05D001509 ORTHO05D001361 6.7e-11 72.4 203 28.1
BcaC08g44635 Brassica carinata HOM05D001509 ORTHO05D001361 8.7e-11 72.0 196 29.6
C06p21530 Brassica napus HOM05D000434 ORTHO05D001361 8.7e-11 72.0 196 29.6
COL.COLO4_14876 Corchorus olitorius HOM05D001509 ORTHO05D001361 1.1e-10 71.6 315 27.9
Gohir.A13G090200 Gossypium hirsutum HOM05D001509 ORTHO05D001361 1.1e-10 71.6 319 28.8
PGSC0003DMG400011057 Solanum tuberosum HOM05D001509 ORTHO05D001361 1.1e-10 71.6 261 27.2
Aa31LG10G9570 Aethionema arabicum HOM05D001509 ORTHO05D001361 1.5e-10 71.2 201 28.9
Aa31LG1G11310 Aethionema arabicum HOM05D012174 ORTHO05D011758 1.5e-10 71.2 161 31.7
A03p00840 Brassica napus HOM05D001509 ORTHO05D001361 1.5e-10 71.2 173 30.6
Hma1.2p1_0350F.1_g132460 Hydrangea macrophylla HOM05D001509 ORTHO05D001361 1.5e-10 71.2 312 27.2
Cpa.g.sc114.2 Carica papaya HOM05D001509 ORTHO05D001361 1.9e-10 70.9 201 27.9
BcaC02g07523 Brassica carinata HOM05D001509 ORTHO05D001361 2.5e-10 70.5 201 29.9
C04p65880 Brassica napus HOM05D001509 ORTHO05D001361 2.5e-10 70.5 201 30.3
Actinidia13119 Actinidia chinensis HOM05D001509 ORTHO05D001361 4.3e-10 69.7 158 29.1
Aa31LG1G22210 Aethionema arabicum HOM05D001509 ORTHO05D001361 4.3e-10 69.7 207 28.0
A03p20630 Brassica napus HOM05D001509 ORTHO05D001361 4.3e-10 69.7 201 29.4
BolC4t28092H Brassica oleracea HOM05D001509 ORTHO05D001361 4.3e-10 69.7 201 30.3
Sp5g08780 Schrenkiella parvula HOM05D001509 ORTHO05D001361 5.6e-10 69.3 200 29.5
Thecc.05G046500 Theobroma cacao HOM05D001509 ORTHO05D001361 5.6e-10 69.3 311 26.0
Atru.chr8.2481 Acer truncatum HOM05D001509 ORTHO05D001361 7.4e-10 68.9 321 28.7
Aqoxy4G03054 Aquilegia oxysepala HOM05D001509 ORTHO05D001361 7.4e-10 68.9 178 28.7
A07p21730 Brassica napus HOM05D000434 ORTHO05D001361 7.4e-10 68.9 197 30.5
Rhsim04G0153100 Rhododendron simsii HOM05D001509 ORTHO05D001361 9.6e-10 68.6 319 26.6
BraA03t09467Z Brassica rapa HOM05D001509 ORTHO05D001361 1.3e-09 68.2 196 26.5
Solyc09g005740.3 Solanum lycopersicum HOM05D001509 ORTHO05D001361 1.3e-09 68.2 258 27.1
Sopen09g001630 Solanum pennellii HOM05D001509 ORTHO05D001361 1.3e-09 68.2 258 27.1
TAR636G3525 Trochodendron aralioides HOM05D001509 ORTHO05D001361 1.6e-09 67.8 155 30.3
BraA07t29855Z Brassica rapa HOM05D000434 ORTHO05D001361 2.8e-09 67.0 197 29.9
Ciclev10012060m.g Citrus clementina HOM05D001509 ORTHO05D001361 2.8e-09 67.0 310 26.5
Peaxi162Scf00039g00073 Petunia axillaris HOM05D001509 ORTHO05D001361 2.8e-09 67.0 167 28.1
Ah.10g032690 Amaranthus hybridus HOM05D001509 ORTHO05D001361 3.7e-09 66.6 203 28.1
C03p01090 Brassica napus HOM05D001509 ORTHO05D001361 3.7e-09 66.6 197 26.9
CiPaw.09G187400 Carya illinoinensis HOM05D001509 ORTHO05D001361 3.7e-09 66.6 324 26.5
FAN09G0072 Fragaria x ananassa HOM05D001509 ORTHO05D001361 3.7e-09 66.6 178 29.2
Nitab4.5_0002995g0040 Nicotiana tabacum HOM05D001509 ORTHO05D001361 3.7e-09 66.6 166 29.5
AT5G02590 Arabidopsis thaliana HOM05D001509 ORTHO05D001361 4.8e-09 66.2 109 32.1
QL07p046613 Quercus lobata HOM05D001509 ORTHO05D001361 4.8e-09 66.2 315 27.0
Thhalv10015638m.g Eutrema salsugineum HOM05D001509 ORTHO05D001361 6.2e-09 65.9 165 27.9
Nitab4.5_0010623g0010 Nicotiana tabacum HOM05D001509 ORTHO05D001361 6.2e-09 65.9 178 29.8
Aqoxy2G01993 Aquilegia oxysepala HOM05D001509 ORTHO05D001361 8.2e-09 65.5 130 31.5
RcHm_v2.0_Chr3g0467701 Rosa chinensis HOM05D001509 ORTHO05D001361 8.2e-09 65.5 315 26.0
Sp6g39930 Schrenkiella parvula HOM05D001509 ORTHO05D001361 8.2e-09 65.5 109 33.0
EL10Ac2g03245 Beta vulgaris HOM05D001509 ORTHO05D001361 1.1e-08 65.1 201 27.9
PSO339G1527 Papaver somniferum HOM05D001509 ORTHO05D001361 1.1e-08 65.1 199 28.6
CSS0022606 Camellia sinensis var. sinensis HOM05D001509 ORTHO05D001361 1.4e-08 64.7 199 28.6
BcaB01g06179 Brassica carinata HOM05D001509 ORTHO05D001361 1.8e-08 64.3 109 35.8
BolC3t12669H Brassica oleracea HOM05D001509 ORTHO05D001361 1.8e-08 64.3 109 35.8
CsaV3_3G035140 Cucumis sativus L. HOM05D001509 ORTHO05D001361 1.8e-08 64.3 201 27.4
Dinv37218 Davidia involucrata HOM05D001509 ORTHO05D001361 1.8e-08 64.3 315 28.6
Lalb_Chr01g0019181 Lupinus albus HOM05D001509 ORTHO05D001361 1.8e-08 64.3 127 29.9
Lj2C101T3 Lonicera japonica HOM05D001509 ORTHO05D001361 2.4e-08 63.9 199 26.6
Oeu060057.1 Olea europaea HOM05D001509 ORTHO05D001361 2.4e-08 63.9 203 29.1
HPP92_019458 Vanilla planifolia HOM05D001509 ORTHO05D001361 2.4e-08 63.9 203 26.6
PSO206G0027 Papaver somniferum HOM05D001509 ORTHO05D001361 3.1e-08 63.5 198 29.8
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 4.0e-08 63.2 127 29.9
BcaB01g06177 Brassica carinata HOM05D001509 ORTHO05D001361 5.3e-08 62.8 109 34.9
BcaB01g06194 Brassica carinata HOM05D001509 ORTHO05D001361 5.3e-08 62.8 109 34.9
CAN.G125.4 Capsicum annuum HOM05D001509 ORTHO05D001361 5.3e-08 62.8 172 28.5
MD12G1136200 Malus domestica HOM05D001509 ORTHO05D001361 6.9e-08 62.4 305 25.6
ClCG04G008510 Citrullus lanatus HOM05D001509 ORTHO05D001361 9.0e-08 62.0 198 28.8
Oeu024371.1 Olea europaea HOM05D001509 ORTHO05D001361 1.2e-07 61.6 129 30.2
AT1G01990 Arabidopsis thaliana HOM05D012174 ORTHO05D011758 1.5e-07 61.2 161 27.3
CARHR210760 Cardamine hirsuta HOM05D001509 ORTHO05D001361 1.5e-07 61.2 109 33.0
Carub.0003s0859 Capsella rubella HOM05D001509 ORTHO05D001361 2.0e-07 60.8 108 34.3
SGA_v2.0_scaffold126G33840 Striga asiatica HOM05D001509 ORTHO05D001361 2.6e-07 60.5 253 26.1
TPR.G21453 Trifolium pratense HOM05D001509 ORTHO05D001361 2.6e-07 60.5 255 23.9
AL1G10330 Arabidopsis lyrata HOM05D012174 ORTHO05D011758 3.4e-07 60.1 161 24.8
MELO3C009284.2 Cucumis melo HOM05D001509 ORTHO05D001361 3.4e-07 60.1 203 27.1
Sed0003574 Sechium edule HOM05D001509 ORTHO05D001361 3.4e-07 60.1 255 26.7
Cfa017445 Carpinus fangiana HOM05D001509 ORTHO05D001361 7.6e-07 58.9 302 29.1
CsaV3_4G024640 Cucumis sativus L. HOM05D001509 ORTHO05D001361 7.6e-07 58.9 157 30.6
AUR62043010 Chenopodium quinoa HOM05D001509 ORTHO05D001361 1.0e-06 58.5 319 22.6
MELO3C003097.2 Cucumis melo HOM05D001509 ORTHO05D001361 1.0e-06 58.5 157 31.2
THA.LOC104814084 Tarenaya hassleriana HOM05D012174 ORTHO05D011758 1.0e-06 58.5 139 25.2
Ca_08796_v3 Cicer arietinum L. HOM05D001509 ORTHO05D001361 1.3e-06 58.2 127 29.9
AUR62040878 Chenopodium quinoa HOM05D001509 ORTHO05D001361 1.7e-06 57.8 130 29.2
Lalb_Chr02g0153241 Lupinus albus HOM05D001509 ORTHO05D001361 2.9e-06 57.0 129 26.4
Lalb_Chr25g0289431 Lupinus albus HOM05D001509 ORTHO05D001361 2.9e-06 57.0 127 28.3
Haze_20718 Corylus avellana HOM05D001509 ORTHO05D001361 4.9e-06 56.2 316 27.2
Thhalv10008646m.g Eutrema salsugineum HOM05D012174 ORTHO05D011758 4.9e-06 56.2 182 27.5
A10p00150 Brassica napus HOM05D012174 ORTHO05D011758 8.4e-06 55.5 137 27.7
BraA10t42294Z Brassica rapa HOM05D012174 ORTHO05D011758 8.4e-06 55.5 137 27.7


User provided reference genes

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