Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 4.5e-110 401.4 215 100.0
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 6.8e-58 228.0 208 66.3
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 1.3e-53 213.8 208 64.4
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 1.3e-53 213.8 222 63.1
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 5.0e-53 211.8 219 62.6
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 4.3e-52 208.8 220 59.1
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 1.2e-51 207.2 210 63.3
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 1.4e-50 203.8 212 62.3
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 6.8e-50 201.4 222 59.0
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.2e-49 200.7 223 59.2
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 2.9e-48 196.1 221 58.4
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 4.9e-48 195.3 220 58.6
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 8.3e-48 194.5 227 59.5
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 8.3e-48 194.5 226 60.2
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 1.1e-47 194.1 223 57.4
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 1.1e-47 194.1 219 57.1
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 3.2e-47 192.6 221 58.4
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 9.2e-47 191.0 221 57.5
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 9.2e-47 191.0 220 55.9
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.2e-46 190.7 222 58.6
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 2.0e-46 189.9 222 56.3
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 2.0e-46 189.9 217 58.1
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 2.7e-46 189.5 222 58.6
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.0e-45 187.6 218 59.6
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 1.0e-45 187.6 220 54.5
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 5.0e-45 185.3 215 55.3
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 1.9e-44 183.3 228 57.9
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 2.5e-44 183.0 224 58.9
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 2.5e-44 183.0 226 58.0
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 9.5e-44 181.0 219 53.9
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 9.5e-44 181.0 216 55.6
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 1.2e-43 180.6 221 56.1
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 1.6e-43 180.3 221 57.0
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 4.7e-43 178.7 226 54.9
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 8.1e-43 177.9 217 55.8
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.1e-42 177.6 177 63.8
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 1.1e-42 177.6 177 63.8
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 1.1e-42 177.6 225 57.3
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 1.4e-42 177.2 222 57.2
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 4.0e-42 175.6 220 55.5
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 8.9e-42 174.5 217 54.4
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 2.0e-41 173.3 218 54.1
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 4.4e-41 172.2 219 52.5
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 2.9e-40 169.5 220 53.6
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 6.4e-40 168.3 222 51.8
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 8.3e-40 167.9 223 50.7
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.1e-39 167.5 228 55.3
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 5.4e-39 165.2 228 54.4
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 5.4e-39 165.2 228 54.4
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 5.4e-39 165.2 221 53.8
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 2.3e-37 159.8 221 52.9
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 3.0e-37 159.5 229 48.9
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 3.0e-37 159.5 220 50.9
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 6.6e-37 158.3 224 50.0
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 8.6e-37 157.9 219 50.2
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 7.3e-36 154.8 220 48.2
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.6e-35 153.7 198 51.5
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.1e-35 153.3 217 49.3
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 3.6e-35 152.5 218 49.5
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 8.1e-35 151.4 220 50.5
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 1.1e-34 151.0 221 49.3
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 1.4e-34 150.6 219 51.6
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 1.4e-34 150.6 222 50.9
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.0e-33 146.7 201 52.7
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 3.4e-33 146.0 218 51.4
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 4.4e-33 145.6 223 51.1
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 7.6e-33 144.8 210 51.9
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 2.2e-32 143.3 220 48.2
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 2.2e-32 143.3 200 51.5
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 2.9e-32 142.9 218 47.2
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 6.4e-32 141.7 222 48.6
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 6.4e-32 141.7 222 48.2
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 6.4e-32 141.7 224 47.8
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 1.4e-31 140.6 215 45.6
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.4e-31 140.6 220 47.7
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 3.5e-30 136.0 211 46.0
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 1.3e-29 134.0 220 46.8
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.7e-29 133.7 211 45.0
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 3.9e-29 132.5 220 47.7
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 8.6e-29 131.3 215 47.0
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 1.9e-28 130.2 273 42.9
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 7.3e-28 128.3 222 46.4
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 7.3e-28 128.3 220 44.5
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 6.2e-27 125.2 225 47.1
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 8.1e-27 124.8 159 50.9
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 1.1e-26 124.4 225 43.6
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 4.0e-26 122.5 226 45.1
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 6.9e-26 121.7 200 52.0
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 8.9e-26 121.3 196 48.0
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 1.2e-25 120.9 187 49.2
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.2e-25 120.9 230 44.3
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 1.5e-25 120.6 221 45.2
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 1.5e-25 120.6 229 46.3
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 1.5e-25 120.6 229 42.4
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.7e-24 117.1 187 47.6
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 1.7e-24 117.1 194 44.3
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 3.8e-24 115.9 187 47.6
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 4.9e-24 115.5 187 43.9
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 5.4e-23 112.1 205 45.4
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 5.4e-23 112.1 190 46.3
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 5.4e-23 112.1 190 46.3
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 5.4e-23 112.1 198 44.4
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 1.2e-22 110.9 217 42.9
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 1.6e-22 110.5 211 39.3
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 2.1e-22 110.2 221 44.3
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 1.3e-21 107.5 194 44.8
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 1.7e-21 107.1 221 43.4
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 2.3e-21 106.7 221 43.0
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 6.6e-21 105.1 194 41.8
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 2.1e-19 100.1 123 52.8
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 4.8e-19 99.0 178 43.3
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 2.4e-18 96.7 187 40.6
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 1.5e-17 94.0 197 40.6
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 2.6e-17 93.2 200 43.5
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 5.8e-17 92.0 164 46.3
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 4.6e-14 82.4 184 41.8
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 1.0e-13 81.3 184 40.8
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 1.0e-13 81.3 184 40.8
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 1.3e-13 80.9 198 37.9
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 6.7e-13 78.6 90 57.8
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 8.7e-13 78.2 172 36.6
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 1.6e-11 73.9 183 36.1
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 4.0e-10 69.3 82 56.1
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 5.3e-10 68.9 163 36.2
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 3.4e-09 66.2 108 46.3
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 5.8e-09 65.5 131 42.7
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 1.3e-08 64.3 211 35.1
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.7e-08 63.9 169 36.7
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 2.2e-08 63.5 111 45.0
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 2.2e-08 63.5 111 45.0
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 2.9e-08 63.2 72 51.4
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 2.4e-07 60.1 111 43.2
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 2.4e-07 60.1 111 43.2
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 3.2e-07 59.7 97 42.3
Thecc.04G308600 Theobroma cacao HOM05D005571 ORTHO05D006919 4.2e-07 59.3 95 41.1
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 1.6e-06 57.4 84 50.0
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 1.6e-06 57.4 84 50.0


User provided reference genes

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