Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 6.1e-112 407.5 210 100.0
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 4.8e-101 371.3 210 88.6
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 2.7e-99 365.5 210 86.7
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 7.7e-99 364.0 210 86.7
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.9e-98 362.1 210 86.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 2.3e-95 352.4 207 85.0
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 3.0e-95 352.1 211 84.8
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 6.8e-95 350.9 211 84.8
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 3.5e-91 338.6 206 84.0
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 3.9e-90 335.1 210 82.4
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 2.5e-89 332.4 207 83.6
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 3.2e-84 315.5 205 74.6
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 5.4e-84 314.7 177 88.1
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.7e-83 312.4 205 77.6
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 6.0e-83 311.2 207 75.8
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 5.6e-81 304.7 204 76.5
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.2e-80 303.5 203 74.4
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.2e-80 303.5 203 76.8
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.1e-80 302.8 208 73.6
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 4.7e-80 301.6 206 76.2
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 8.0e-80 300.8 203 74.9
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.4e-79 300.1 213 73.7
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.8e-79 299.7 203 74.9
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 3.1e-79 298.9 204 71.1
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 3.1e-79 298.9 203 74.4
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 5.2e-79 298.1 201 74.6
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 8.9e-79 297.4 207 73.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.2e-78 297.0 206 74.8
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.2e-78 297.0 206 74.3
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.2e-78 297.0 203 76.8
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.5e-78 296.6 203 74.9
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.5e-78 296.6 209 72.2
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.0e-78 296.2 208 74.0
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 2.6e-78 295.8 203 73.4
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.4e-78 295.4 208 73.6
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.5e-78 294.3 207 73.9
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 7.5e-78 294.3 207 73.9
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 9.8e-78 293.9 203 76.4
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.3e-77 293.5 195 76.4
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.7e-77 293.1 181 79.0
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 2.2e-77 292.7 203 74.9
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 2.9e-77 292.4 178 79.8
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.9e-77 291.6 199 74.4
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.4e-77 291.2 199 74.4
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 8.3e-77 290.8 209 70.3
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 8.3e-77 290.8 199 74.4
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.1e-76 290.4 185 76.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.1e-76 290.4 206 72.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.1e-76 290.4 213 69.5
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 3.2e-76 288.9 205 71.7
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 4.1e-76 288.5 198 71.7
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 5.4e-76 288.1 206 71.8
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 7.1e-76 287.7 182 78.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.1e-76 287.7 209 69.9
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.2e-75 287.0 201 75.1
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.1e-75 286.2 204 72.5
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.1e-75 286.2 178 79.8
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 2.7e-75 285.8 204 71.1
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.7e-75 285.8 207 71.0
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 3.5e-75 285.4 186 75.8
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.6e-74 281.2 210 68.6
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 8.6e-74 280.8 202 70.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.5e-73 280.0 206 71.8
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.5e-73 279.3 206 71.8
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.8e-72 275.8 219 68.9
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.6e-72 275.4 207 69.6
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.7e-72 275.0 161 82.6
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 4.7e-72 275.0 201 71.6
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 6.2e-72 274.6 221 67.9
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.1e-71 273.9 170 79.4
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.8e-71 273.1 208 69.7
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 3.1e-71 272.3 199 68.3
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 3.1e-71 272.3 207 68.6
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 3.1e-71 272.3 205 68.8
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.0e-71 271.9 207 67.6
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 4.0e-71 271.9 205 68.3
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 5.2e-71 271.6 157 84.1
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 8.9e-71 270.8 203 69.5
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 8.9e-71 270.8 203 69.5
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 8.9e-71 270.8 207 69.1
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.2e-70 270.4 206 70.4
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.5e-70 270.0 203 68.5
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.6e-70 269.2 205 69.8
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.6e-70 269.2 201 71.1
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.4e-70 268.5 205 68.3
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 7.5e-70 267.7 286 52.8
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.3e-69 266.9 204 67.2
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.2e-69 266.2 204 66.2
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.7e-69 265.4 200 69.0
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.9e-69 265.0 173 72.3
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.9e-68 263.1 200 66.5
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.4e-68 262.7 197 69.5
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.2e-68 262.3 190 72.1
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 3.2e-68 262.3 201 68.7
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 7.1e-68 261.2 205 69.8
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 7.1e-68 261.2 203 67.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 9.2e-68 260.8 201 66.7
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.2e-67 260.4 192 69.3
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 2.1e-67 259.6 202 67.8
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.1e-67 259.6 206 65.5
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 2.7e-67 259.2 200 68.0
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.7e-67 259.2 202 65.3
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 3.5e-67 258.8 199 66.3
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 4.6e-67 258.5 208 64.9
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 4.6e-67 258.5 196 68.9
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.3e-66 256.9 203 65.0
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.3e-66 256.1 159 79.9
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 5.1e-66 255.0 200 65.5
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 6.6e-66 254.6 209 65.1
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.5e-65 253.4 209 64.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 9.6e-65 250.8 193 67.4
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.2e-64 250.4 174 70.1
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.8e-64 249.2 207 68.1
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.8e-64 249.2 205 62.9
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 3.6e-64 248.8 193 66.8
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 4.0e-63 245.4 202 66.3
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 6.8e-63 244.6 206 63.6
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 8.9e-63 244.2 204 63.7
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.6e-62 242.7 201 64.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 2.2e-61 239.6 172 69.8
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.4e-61 238.0 165 72.1
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.3e-58 230.3 203 63.1
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 7.3e-57 224.6 162 70.4
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 9.0e-55 217.6 128 83.6
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.5e-54 216.9 168 70.2
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.6e-51 206.8 195 54.9
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.6e-50 201.4 127 76.4
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 4.0e-47 192.2 200 53.5
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.2e-46 190.7 170 56.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-46 189.9 156 64.1
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 6.4e-45 184.9 123 78.9
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.2e-44 182.6 96 89.6
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.2e-43 180.6 150 58.7
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.0e-43 178.3 192 53.6
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 6.0e-43 178.3 116 75.0
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.1e-41 174.1 110 81.8
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.9e-41 173.3 103 81.6
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 3.7e-40 169.1 107 77.6
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 3.8e-37 159.1 172 49.4
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.2e-36 155.6 149 51.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 5.5e-36 155.2 147 54.4
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.2e-30 137.5 173 46.8
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 3.8e-29 132.5 102 66.7
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.6e-19 100.5 108 54.6
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.0e-17 93.6 72 59.7
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.5e-17 93.2 159 36.5
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 3.3e-17 92.8 72 59.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 7.4e-17 91.7 59 69.5
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.3e-16 88.6 55 72.7
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.1e-15 86.3 218 34.9
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 3.4e-14 82.8 188 34.0
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 7.2e-12 75.1 47 80.9
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.4e-10 70.9 84 47.6
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.3e-10 70.1 53 67.9
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 3.9e-10 69.3 40 80.0
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 9.1e-07 58.2 53 54.7


User provided reference genes

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