Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 1.8e-86 322.8 191 100.0
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 3.5e-66 255.4 191 79.1
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.0e-65 253.8 193 78.2
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 2.3e-65 252.7 193 78.8
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 4.3e-64 248.4 196 75.5
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 9.6e-64 247.3 191 75.4
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.2e-61 240.4 194 74.7
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 3.4e-61 238.8 196 74.5
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 1.7e-60 236.5 191 78.5
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 9.3e-59 230.7 197 67.5
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.0e-57 227.3 190 68.4
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 8.7e-57 224.2 203 68.5
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 8.7e-57 224.2 191 73.8
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 5.6e-56 221.5 191 64.4
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 1.3e-55 220.3 195 68.2
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 2.1e-55 219.5 191 71.7
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 2.8e-55 219.2 193 69.9
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 2.8e-55 219.2 191 66.0
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 8.1e-55 217.6 192 73.4
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 8.1e-55 217.6 192 66.7
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.4e-54 216.9 194 68.6
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 1.8e-54 216.5 192 66.1
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 6.9e-54 214.5 192 68.2
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 7.6e-53 211.1 190 62.1
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 1.7e-52 209.9 191 60.7
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 3.8e-52 208.8 191 66.5
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 4.9e-52 208.4 188 68.1
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 6.5e-52 208.0 194 63.4
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.1e-51 207.2 192 68.2
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 1.9e-51 206.5 190 64.7
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 3.2e-51 205.7 190 66.8
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 4.2e-51 205.3 189 69.3
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 7.1e-51 204.5 196 67.9
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 2.7e-50 202.6 186 73.1
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.8e-49 199.9 191 68.6
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.8e-49 199.9 190 64.2
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 3.0e-49 199.1 190 66.3
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 3.0e-49 199.1 189 69.8
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.9e-48 196.4 191 60.2
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.9e-48 196.4 191 60.7
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 3.3e-48 195.7 193 62.2
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.3e-48 195.3 191 63.4
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 4.3e-48 195.3 191 68.6
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 5.7e-48 194.9 195 68.2
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 9.6e-48 194.1 191 62.3
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.1e-47 193.0 191 60.2
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 2.1e-47 193.0 190 65.3
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 3.7e-47 192.2 191 65.4
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 4.8e-47 191.8 194 66.0
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.3e-47 191.4 191 62.3
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 6.3e-47 191.4 187 65.2
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.4e-46 190.3 191 59.2
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 2.4e-46 189.5 193 68.4
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 3.1e-46 189.1 192 69.3
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 3.1e-46 189.1 187 66.8
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 5.3e-46 188.3 192 67.7
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 6.9e-46 188.0 190 63.2
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 9.0e-46 187.6 192 67.7
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 9.0e-46 187.6 190 64.7
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 1.2e-45 187.2 191 67.0
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 2.6e-45 186.0 182 63.2
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 2.6e-45 186.0 190 66.8
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 4.5e-45 185.3 195 64.6
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.7e-44 183.3 191 64.9
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.2e-44 183.0 192 58.3
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 2.9e-44 182.6 191 67.0
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.9e-44 182.6 188 64.9
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.8e-44 182.2 195 60.0
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 6.5e-44 181.4 185 67.0
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 8.5e-44 181.0 192 64.1
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 8.5e-44 181.0 192 65.1
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.4e-43 180.3 197 57.9
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 4.2e-43 178.7 197 58.9
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 4.2e-43 178.7 190 62.1
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 1.2e-42 177.2 192 63.0
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.2e-42 177.2 190 64.2
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.6e-42 176.8 192 62.5
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.6e-42 176.8 192 62.5
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.6e-42 176.8 192 62.5
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.6e-42 176.8 203 63.5
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 2.1e-42 176.4 191 58.6
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.1e-42 176.4 190 64.2
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 7.9e-42 174.5 187 55.6
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 5.1e-41 171.8 191 62.8
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 6.7e-41 171.4 192 62.0
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 6.7e-41 171.4 192 62.0
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 8.7e-41 171.0 188 64.9
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 9.7e-40 167.5 190 65.3
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 3.7e-39 165.6 185 64.9
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 1.8e-38 163.3 194 60.8
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 5.3e-38 161.8 192 62.0
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 6.9e-38 161.4 191 61.3
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 6.9e-38 161.4 188 60.1
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 9.1e-38 161.0 193 61.1
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 1.5e-37 160.2 189 62.4
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 2.6e-37 159.5 192 61.5
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.6e-37 159.5 193 61.1
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 3.4e-37 159.1 192 60.9
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 3.4e-37 159.1 191 61.8
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 3.4e-37 159.1 191 61.8
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 4.5e-37 158.7 189 50.3
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 7.7e-37 157.9 193 61.1
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 2.2e-36 156.4 187 56.1
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.4e-35 153.7 141 66.7
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 5.5e-35 151.8 163 55.8
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 1.6e-34 150.2 190 47.9
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 1.0e-33 147.5 190 56.8
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 3.9e-33 145.6 165 54.5
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 6.7e-33 144.8 163 54.0
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.1e-32 144.1 135 65.2
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 1.5e-32 143.7 147 70.7
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-31 140.6 159 61.0
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 6.3e-31 138.3 135 63.7
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 2.4e-30 136.3 132 53.0
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 1.2e-29 134.0 182 46.7
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 7.7e-29 131.3 131 59.5
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.8e-28 129.0 133 58.6
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 8.5e-28 127.9 125 55.2
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.1e-27 127.5 130 56.9
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.1e-27 127.5 185 45.4
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 1.4e-27 127.1 121 57.0
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-27 126.7 131 56.5
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 9.4e-27 124.4 131 55.7
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 6.1e-26 121.7 202 53.5
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-22 110.5 117 64.1
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 7.7e-21 104.8 99 59.6
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 2.1e-18 96.7 187 46.5
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 4.0e-17 92.4 111 52.3
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 1.5e-16 90.5 105 67.6
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.5e-16 90.5 111 49.5
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.7e-15 87.0 87 52.9
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 6.3e-15 85.1 148 54.1
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 2.2e-12 76.6 186 44.6
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 4.7e-10 68.9 67 62.7
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 4.0e-09 65.9 59 76.3
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 6.8e-09 65.1 59 57.6


User provided reference genes

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