Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.6e-124 449.5 233 100.0
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 6.2e-89 331.3 233 70.0
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.3e-86 323.6 233 70.8
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 1.9e-85 319.7 233 67.0
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 1.0e-83 313.9 233 68.2
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 1.0e-83 313.9 234 67.5
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 2.3e-83 312.8 233 68.2
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 5.1e-83 311.6 233 67.8
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.8e-80 303.1 234 65.8
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 2.3e-80 302.8 233 67.0
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 1.1e-77 293.9 234 63.7
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.4e-77 293.5 234 65.0
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.9e-74 283.1 237 62.9
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.2e-68 263.8 234 60.7
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 7.8e-68 261.2 237 57.8
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.9e-67 258.8 233 58.4
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 6.6e-67 258.1 234 56.4
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 8.7e-67 257.7 236 57.2
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 2.5e-66 256.1 228 57.0
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 2.5e-66 256.1 230 57.4
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 4.3e-66 255.4 231 58.0
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 9.6e-66 254.2 234 57.7
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.1e-65 253.1 236 56.4
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 4.8e-65 251.9 233 55.8
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 8.1e-65 251.1 228 56.6
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 5.3e-64 248.4 229 54.6
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.9e-64 248.1 230 57.0
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 1.5e-63 246.9 232 55.2
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.5e-63 246.9 230 56.5
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.5e-63 246.9 230 56.5
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.0e-63 246.5 228 54.4
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 2.0e-63 246.5 230 56.5
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.0e-63 246.5 232 56.5
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 2.6e-63 246.1 234 53.4
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.4e-63 245.7 233 53.6
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 7.6e-63 244.6 230 55.2
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 9.9e-63 244.2 233 55.8
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 9.9e-63 244.2 233 55.8
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.7e-62 243.4 231 54.1
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.9e-62 242.7 206 57.8
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 4.9e-62 241.9 231 56.3
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 6.4e-62 241.5 213 58.2
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.1e-61 240.7 232 54.7
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.9e-61 240.0 231 55.4
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 1.9e-61 240.0 233 54.5
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.9e-61 240.0 193 62.2
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 3.2e-61 239.2 232 55.2
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 7.1e-61 238.0 224 53.1
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 7.1e-61 238.0 231 54.1
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 7.1e-61 238.0 231 51.5
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 9.3e-61 237.7 231 51.9
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.2e-60 237.3 192 60.9
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.2e-60 237.3 230 54.8
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.6e-60 236.9 228 58.3
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.6e-60 236.9 230 52.2
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 2.7e-60 236.1 224 54.0
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.7e-60 236.1 233 53.6
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.5e-60 235.7 197 60.4
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 1.0e-59 234.2 227 51.5
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 3.0e-59 232.6 229 52.0
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 3.0e-59 232.6 235 51.1
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 8.7e-59 231.1 234 53.8
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 8.7e-59 231.1 192 60.4
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.1e-58 230.7 209 57.4
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.5e-58 230.3 227 52.9
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 1.5e-58 230.3 230 52.6
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.9e-58 229.9 230 52.2
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 5.6e-58 228.4 230 50.4
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 5.6e-58 228.4 198 60.6
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 7.4e-58 228.0 227 52.9
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 9.6e-58 227.6 193 53.4
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 1.3e-57 227.3 189 59.3
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 1.6e-57 226.9 228 54.4
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 1.6e-57 226.9 227 52.0
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 2.1e-57 226.5 226 51.3
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 2.8e-57 226.1 233 52.4
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 8.1e-57 224.6 230 50.4
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.4e-56 223.8 193 53.4
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.4e-56 223.8 193 53.4
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.4e-56 223.8 193 53.4
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.8e-56 223.4 183 59.0
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.1e-56 222.6 230 50.9
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 4.0e-56 222.2 193 52.3
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.0e-56 222.2 212 53.3
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 6.9e-56 221.5 193 52.8
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 9.0e-56 221.1 193 53.4
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.2e-55 220.7 193 52.8
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.5e-55 220.3 231 50.6
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.5e-55 220.3 192 54.7
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 2.0e-55 219.9 188 53.2
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 2.0e-55 219.9 245 48.2
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 3.4e-55 219.2 188 53.2
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.4e-55 219.2 245 48.2
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 5.8e-55 218.4 195 53.3
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 7.6e-55 218.0 228 49.1
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.7e-54 216.9 245 47.8
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 1.7e-54 216.9 227 49.3
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 2.2e-54 216.5 192 54.7
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 4.9e-54 215.3 244 46.7
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.4e-53 213.0 253 49.4
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.2e-53 212.2 230 51.3
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.6e-52 210.3 229 52.0
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 4.6e-52 208.8 229 51.1
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.0e-51 207.6 226 48.7
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 1.8e-51 206.8 193 57.5
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.9e-51 205.7 263 44.5
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 5.1e-51 205.3 259 45.2
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.1e-50 204.1 246 45.5
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 7.4e-50 201.4 182 50.5
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.8e-49 199.5 187 54.0
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.4e-48 196.4 180 54.4
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.0e-48 195.7 199 53.3
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.5e-47 193.7 214 47.2
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 5.8e-47 191.8 245 44.1
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.1e-45 187.6 180 52.8
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 2.5e-45 186.4 202 49.0
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.1e-42 177.6 234 42.3
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 2.5e-42 176.4 188 46.3
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.3e-41 174.1 167 50.9
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 4.8e-41 172.2 142 59.2
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.7e-38 163.7 234 41.0
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 6.5e-38 161.8 123 64.2
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 7.2e-37 158.3 149 55.0
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 6.1e-36 155.2 249 41.0
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 2.5e-34 149.8 312 34.6
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 3.3e-34 149.4 234 41.5
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 9.7e-34 147.9 154 48.7
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.2e-33 146.7 210 40.5
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 6.5e-30 135.2 227 36.1
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.2e-29 132.9 138 50.0
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 1.0e-27 127.9 229 36.2
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 1.0e-27 127.9 199 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 4.5e-23 112.5 183 37.7
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 8.5e-22 108.2 246 33.3
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.4e-21 107.5 143 42.7
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 7.4e-18 95.1 76 61.8
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 7.4e-18 95.1 115 45.2
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.1e-16 91.3 88 54.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 5.3e-16 89.0 99 46.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.0e-11 74.7 63 49.2
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 2.0e-10 70.5 181 26.5
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.0e-07 60.5 77 48.1
FAN27G0705 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.7e-07 60.1 93 36.6
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.7e-06 57.4 79 49.4


User provided reference genes

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