Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 2845.5 1376 100.0
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 2244.5 1387 79.2
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 2190.2 1378 78.2
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 2184.8 1389 77.8
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 2179.1 1402 76.8
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 2152.5 1380 76.5
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 2135.9 1382 76.3
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 2110.5 1383 74.8
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 2101.6 1383 74.4
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 2055.0 1341 76.4
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 2015.4 1387 73.1
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1670.2 1447 59.8
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1666.4 1401 60.5
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1630.2 1455 58.4
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1590.1 1393 58.6
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1577.8 1397 57.7
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1575.8 1398 56.9
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1568.9 1405 56.9
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1565.8 1412 58.4
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1561.2 1391 58.3
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1561.2 1384 58.3
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1557.3 1407 56.9
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1556.2 1389 57.8
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1555.4 1391 58.0
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1545.0 1391 57.4
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1537.3 1403 56.7
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1523.1 1399 55.2
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1518.4 1401 55.4
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1516.9 1408 55.5
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1503.0 1490 53.1
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1494.2 1392 55.5
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1465.3 1415 54.2
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1464.9 1402 54.1
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1457.6 1398 54.4
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1452.2 1359 55.4
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1441.8 1396 55.3
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1437.6 1400 54.1
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1429.5 1379 53.8
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1413.3 1382 52.0
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1412.1 1400 53.9
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1411.4 1399 53.0
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1411.4 1459 50.9
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1405.6 1428 52.5
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1393.6 1431 52.1
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1387.5 1409 52.4
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1385.2 1379 51.6
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1382.9 1461 51.6
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1382.5 1380 51.2
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1375.5 1380 51.2
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1370.5 1386 51.6
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1369.8 1390 52.2
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1369.0 1387 51.1
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1366.7 1376 51.5
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1366.7 1374 51.7
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1363.6 1409 51.2
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1361.7 1375 51.5
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1360.5 1396 51.9
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1356.7 1395 50.5
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1356.7 1385 50.6
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1350.1 1376 51.3
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1350.1 1136 58.9
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1349.0 1166 58.5
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1345.5 1374 51.5
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1342.0 1383 50.5
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1334.3 1411 50.5
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1329.3 1494 48.7
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1312.4 1413 49.7
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1307.0 1396 50.9
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1305.8 1169 56.4
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1304.7 1352 51.7
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1287.7 1391 50.0
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1254.6 1384 49.1
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1241.9 1350 50.1
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1241.5 1430 46.6
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1231.9 1393 49.7
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1221.5 1382 48.6
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1199.5 1399 47.2
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1194.1 1393 48.6
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1157.9 1380 46.2
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1147.1 980 58.4
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1140.6 1058 55.4
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1134.0 1058 54.9
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1129.8 1085 53.8
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1128.6 979 58.2
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1127.1 1405 45.1
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 0.0e+00 1079.7 1046 52.2
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.9e-295 1019.2 949 54.7
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 7.0e-257 891.7 1386 39.5
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 7.0e-249 865.1 883 51.8
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 2.8e-229 800.0 1490 36.0
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 8.1e-229 798.5 1515 35.4
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 6.2e-221 772.3 738 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 3.4e-219 766.5 1483 35.0
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 2.3e-207 727.2 852 47.2
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 8.4e-202 708.8 780 49.9
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.9e-198 697.6 607 59.1
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 7.4e-198 695.7 1336 36.2
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 1.3e-183 648.3 588 57.1
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 1.3e-178 631.7 600 55.2
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.5e-177 626.3 786 45.3
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 3.9e-167 593.6 794 44.2
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.8e-162 577.0 657 48.7
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.6e-155 554.3 889 40.6
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.5e-155 553.9 580 52.1
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.1e-148 532.3 1342 29.9
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 4.1e-140 503.8 597 48.9
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 2.2e-109 401.7 388 55.2
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 8.7e-98 363.2 434 47.2
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 1.1e-95 356.3 315 56.5
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 1.1e-87 329.7 200 77.5
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-86 325.9 343 49.3
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 3.2e-76 291.6 267 56.9
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 2.2e-69 268.9 241 58.5
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.6e-67 262.7 334 43.4
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 7.9e-67 260.4 258 54.7
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 7.6e-62 243.8 348 43.4
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 1.7e-61 242.7 1631 22.4
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.1e-55 221.9 302 41.7
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-53 216.1 256 46.9
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 3.8e-53 214.9 243 48.1
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 7.2e-52 210.7 197 53.8
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 1.6e-51 209.5 185 56.2
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 1.1e-49 203.4 853 26.4
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 1.3e-48 199.9 232 46.6
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 9.1e-47 193.7 190 52.6
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 5.9e-46 191.0 615 25.9
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 6.5e-37 161.0 179 48.0
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 2.5e-36 159.1 189 47.1
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 1.4e-34 153.3 104 69.2
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.2e-33 150.2 85 83.5
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.3e-33 148.7 153 47.1
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 4.1e-31 141.7 252 36.1
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.3e-29 136.7 161 45.3
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 9.8e-25 120.6 74 74.3
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 6.3e-24 117.9 117 48.7
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.1e-20 107.1 147 45.6
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.5e-20 106.7 87 63.2
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 1.2e-19 103.6 115 45.2
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.2e-14 87.0 86 47.7
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 5.9e-14 84.7 55 69.1
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 1.1e-12 80.5 130 36.9
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 2.5e-12 79.3 86 50.0
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 7.3e-12 77.8 63 58.7
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 7.3e-12 77.8 63 58.7
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 1.6e-11 76.6 45 77.8
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 4.7e-11 75.1 55 63.6
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 4.7e-11 75.1 74 52.7
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.0e-10 73.9 63 57.1
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 2.3e-10 72.8 55 63.6
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.4e-09 68.9 50 66.0
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.4e-09 68.6 51 66.7
Psat0s3766g0160 Pisum sativum HOM05D002292 ORTHO05D012672 6.4e-08 64.7 35 88.6
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-07 63.5 55 47.3
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 7.0e-07 61.2 52 65.4
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 9.2e-07 60.8 143 32.2
Hma1.2p1_0240F.1_g100120 Hydrangea macrophylla HOM05D002634 ORTHO05D003100 2.7e-06 59.3 105 34.3
DCAR_013764 Daucus carota HOM05D005961 ORTHO05D007391 4.6e-06 58.5 133 27.1
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 6.0e-06 58.2 109 34.9


User provided reference genes

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