Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 4.3e-69 264.6 142 100.0
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 1.4e-40 169.9 138 73.9
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 2.1e-39 166.0 138 68.1
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 8.8e-38 160.6 140 65.7
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 6.3e-36 154.5 138 65.9
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 4.1e-35 151.8 138 65.9
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 4.1e-35 151.8 137 65.7
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.6e-34 149.8 138 63.0
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.3e-33 146.7 142 63.4
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 2.9e-33 145.6 142 63.4
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 3.8e-33 145.2 138 60.9
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 2.7e-31 139.0 135 60.0
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 3.0e-30 135.6 138 63.8
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 7.5e-29 131.0 140 57.9
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 1.1e-27 127.1 139 53.2
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 3.1e-27 125.6 136 57.4
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 9.1e-27 124.0 115 66.1
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.2e-26 123.6 142 51.4
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 2.7e-26 122.5 135 52.6
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 1.7e-25 119.8 135 51.9
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 2.2e-25 119.4 133 56.4
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 2.9e-25 119.0 132 58.3
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 5.0e-25 118.2 135 54.8
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 3.2e-24 115.5 136 51.5
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 7.2e-24 114.4 139 51.8
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.6e-23 113.2 132 49.2
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 2.7e-23 112.5 119 55.5
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 2.7e-23 112.5 139 50.4
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 6.1e-23 111.3 117 58.1
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 1.8e-22 109.8 118 55.1
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 3.0e-22 109.0 141 50.4
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 3.0e-22 109.0 136 51.5
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 5.2e-22 108.2 136 50.7
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 5.2e-22 108.2 138 50.0
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 5.2e-22 108.2 136 51.5
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.2e-21 107.1 135 49.6
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.2e-21 107.1 135 49.6
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.2e-21 107.1 139 50.4
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 1.5e-21 106.7 115 56.5
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 3.4e-21 105.5 134 47.0
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 3.4e-21 105.5 138 47.8
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 4.4e-21 105.1 143 46.9
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 7.5e-21 104.4 134 47.0
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 1.3e-20 103.6 130 48.5
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 1.7e-20 103.2 142 47.9
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 3.7e-20 102.1 132 49.2
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 3.7e-20 102.1 135 47.4
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 4.8e-20 101.7 135 50.4
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 4.8e-20 101.7 132 48.5
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 6.3e-20 101.3 138 45.7
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 1.1e-19 100.5 132 46.2
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 3.1e-19 99.0 145 49.0
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 4.1e-19 98.6 139 51.1
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 4.1e-19 98.6 126 53.2
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 5.4e-19 98.2 142 47.2
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 7.0e-19 97.8 106 50.0
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 9.1e-19 97.4 140 45.0
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 9.1e-19 97.4 143 46.9
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 1.2e-18 97.1 144 43.1
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 2.7e-18 95.9 137 50.4
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 2.7e-18 95.9 139 45.3
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 4.5e-18 95.1 130 51.5
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 4.5e-18 95.1 145 44.8
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 1.3e-17 93.6 138 47.1
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.9e-17 92.4 119 47.9
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 2.9e-17 92.4 132 46.2
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 3.8e-17 92.0 148 41.9
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 5.0e-17 91.7 135 44.4
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 6.5e-17 91.3 131 45.8
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 8.6e-17 90.9 102 59.8
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.1e-16 90.5 139 48.2
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.1e-16 90.5 119 47.9
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 2.5e-16 89.4 129 45.7
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.2e-16 88.6 139 47.5
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.2e-16 88.6 139 47.5
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 4.2e-16 88.6 116 51.7
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 7.2e-16 87.8 125 45.6
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 9.5e-16 87.4 138 42.8
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 1.2e-15 87.0 128 43.8
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.6e-15 85.5 139 45.3
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.6e-15 85.5 162 43.8
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 3.6e-15 85.5 142 45.1
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 4.7e-15 85.1 75 64.0
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 4.7e-15 85.1 129 44.2
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 1.0e-14 84.0 138 42.8
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 4.0e-14 82.0 115 52.2
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 5.2e-14 81.6 122 48.4
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 8.9e-14 80.9 98 46.9
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 8.9e-14 80.9 98 46.9
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 8.9e-14 80.9 109 51.4
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 2.0e-13 79.7 129 40.3
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.6e-13 79.3 128 44.5
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 4.4e-13 78.6 82 53.7
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 4.4e-13 78.6 82 53.7
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 5.7e-13 78.2 141 39.0
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 7.5e-13 77.8 106 45.3
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 1.7e-12 76.6 129 41.1
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 1.7e-12 76.6 116 44.8
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 2.8e-12 75.9 141 38.3
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 4.9e-12 75.1 82 51.2
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 6.3e-12 74.7 118 41.5
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 6.3e-12 74.7 74 58.1
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 8.3e-12 74.3 131 38.2
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 5.4e-11 71.6 135 41.5
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 9.2e-11 70.9 142 38.0
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 1.6e-10 70.1 82 47.6
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 1.6e-10 70.1 109 46.8
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 2.7e-10 69.3 147 36.1
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 3.5e-10 68.9 142 36.6
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 5.9e-10 68.2 82 48.8
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 7.8e-10 67.8 153 32.0
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 1.7e-09 66.6 90 46.7
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 2.9e-09 65.9 118 39.8
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 3.8e-09 65.5 108 42.6
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 5.0e-09 65.1 130 37.7
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 8.6e-09 64.3 98 42.9
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 8.6e-09 64.3 133 36.1
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 1.1e-08 63.9 129 39.5
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.9e-08 63.2 124 37.9
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 1.9e-08 63.2 103 42.7
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 1.9e-08 63.2 103 42.7
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 1.9e-08 63.2 88 52.3
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 1.9e-08 63.2 80 45.0
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 2.5e-08 62.8 102 42.2
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 2.5e-08 62.8 59 54.2
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 4.3e-08 62.0 85 49.4
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 4.3e-08 62.0 68 50.0
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 4.3e-08 62.0 85 49.4
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 5.6e-08 61.6 67 55.2
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 1.2e-07 60.5 59 54.2
PSO063G2671 Papaver somniferum HOM05D000509 ORTHO05D006393 1.6e-07 60.1 131 36.6
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 6.1e-07 58.2 86 45.3
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 6.1e-07 58.2 85 45.9
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 8.0e-07 57.8 106 37.7
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 1.0e-06 57.4 84 44.0
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.4e-06 57.0 89 41.6
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 8.9e-06 54.3 91 46.2


User provided reference genes

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