Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.1e-127 459.9 229 100.0
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 3.1e-125 451.8 229 97.8
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 4.0e-125 451.4 229 97.8
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 2.6e-124 448.7 229 97.4
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 3.4e-124 448.4 229 97.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 3.4e-124 448.4 229 96.9
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 3.4e-124 448.4 229 97.4
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 5.8e-124 447.6 229 96.9
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 9.9e-124 446.8 229 96.5
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 95.2
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 1.7e-123 446.0 229 95.2
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 96.9
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 3.8e-123 444.9 229 94.8
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 6.4e-123 444.1 227 96.0
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 6.4e-123 444.1 229 93.9
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 8.4e-123 443.7 229 96.1
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 2.4e-122 442.2 229 93.9
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 2.4e-122 442.2 227 94.7
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.2e-122 441.8 229 93.4
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 4.2e-122 441.4 229 93.4
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 5.4e-122 441.0 229 94.8
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 5.4e-122 441.0 227 94.3
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 93.4
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 9.3e-122 440.3 229 93.0
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.2e-121 439.9 227 93.4
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 93.0
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.6e-121 439.5 229 93.4
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 1.6e-121 439.5 227 93.8
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 93.4
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 93.0
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 92.6
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 2.7e-121 438.7 229 93.0
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 3.5e-121 438.3 227 93.4
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.5e-121 438.3 229 91.7
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 6.0e-121 437.6 227 93.4
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 7.8e-121 437.2 227 93.4
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 92.6
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 92.6
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 7.8e-121 437.2 229 93.0
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.0e-120 436.8 227 93.0
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.3e-120 435.6 227 93.0
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 2.3e-120 435.6 227 92.5
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 2.3e-120 435.6 229 91.3
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 92.1
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.0e-120 435.3 229 92.1
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.0e-120 435.3 227 92.1
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 1.1e-119 433.3 227 92.1
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.1e-119 433.3 229 90.4
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.5e-119 432.2 227 92.1
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 2.5e-119 432.2 227 91.6
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.5e-119 432.2 229 91.7
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 9.6e-119 430.3 227 92.1
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 1.3e-118 429.9 227 91.6
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.1e-118 429.1 229 91.3
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.1e-118 429.1 227 92.1
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 3.6e-118 428.3 229 90.4
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 4.8e-118 427.9 229 90.4
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 4.8e-118 427.9 227 91.6
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 8.1e-118 427.2 227 90.3
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 1.1e-117 426.8 227 89.9
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 89.4
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 91.2
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 1.4e-117 426.4 227 90.3
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 2.4e-117 425.6 220 92.7
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 9.0e-117 423.7 229 90.0
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 2.6e-116 422.2 229 90.4
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 3.4e-116 421.8 229 90.4
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.3e-115 419.9 227 88.1
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.7e-115 419.5 227 89.0
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 4.9e-115 417.9 227 89.4
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 88.6
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 88.6
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 88.6
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 88.6
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 6.4e-115 417.5 229 88.6
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 1.4e-114 416.4 229 88.2
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 4.2e-114 414.8 227 88.1
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 7.1e-114 414.1 229 85.6
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 1.6e-113 412.9 229 86.9
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.1e-113 412.5 229 85.2
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.7e-113 412.1 227 89.0
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 4.6e-113 411.4 229 90.0
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 7.9e-113 410.6 229 86.9
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 1.3e-112 409.8 238 85.3
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 2.3e-112 409.1 229 86.0
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 2.3e-112 409.1 229 86.9
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 5.1e-112 407.9 229 86.0
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 6.7e-112 407.5 229 86.0
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 8.7e-112 407.1 229 86.0
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 1.5e-111 406.4 226 85.4
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.5e-111 405.6 229 85.6
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 4.3e-111 404.8 226 85.0
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 9.6e-111 403.7 229 85.6
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 1.3e-110 403.3 227 85.5
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.6e-110 402.9 256 79.3
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 6.9e-109 397.5 227 84.1
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 1.7e-107 392.9 227 81.9
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 1.2e-105 386.7 201 94.0
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 2.7e-105 385.6 202 92.6
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.7e-105 385.6 202 92.6
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 3.0e-104 382.1 203 91.6
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.0e-104 382.1 229 83.0
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 5.6e-103 377.9 229 80.3
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 3.1e-101 372.1 227 77.1
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 1.0e-99 367.1 227 75.3
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 4.9e-99 364.8 190 94.7
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.1e-98 363.6 250 75.6
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 1.9e-98 362.8 210 80.5
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 3.2e-98 362.1 191 92.7
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 3.2e-98 362.1 200 87.5
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 5.5e-98 361.3 190 92.1
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.6e-97 359.8 229 72.5
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.6e-97 359.8 229 72.5
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 4.6e-97 358.2 229 77.7
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 1.8e-96 356.3 233 77.7
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 2.3e-96 355.9 197 87.8
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 2.3e-96 355.9 191 91.1
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 5.1e-96 354.8 227 79.3
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 5.1e-96 354.8 187 94.1
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 2.8e-94 349.0 185 93.5
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 1.5e-92 343.2 185 90.3
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 4.5e-92 341.7 226 71.2
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 5.1e-88 328.2 226 72.1
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 2.0e-84 316.2 160 95.6
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 1.1e-82 310.5 164 93.3
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 2.5e-82 309.3 355 50.1
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 5.9e-76 288.1 162 85.8
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.1e-69 265.8 162 76.5
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.0e-59 234.2 120 93.3
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.7e-57 225.3 131 79.4
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 1.0e-56 224.2 154 68.8
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 9.2e-37 157.9 140 59.3
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 4.6e-28 129.0 69 88.4
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 1.3e-22 110.9 62 77.4
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 3.3e-18 96.3 152 40.8
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 1.2e-17 94.4 124 48.4
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 7.6e-15 85.1 45 84.4
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 1.3e-14 84.3 81 53.1
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 7.1e-13 78.6 52 67.3
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.1e-12 77.0 79 50.6
Aa31LG9G12690 Aethionema arabicum HOM05D005468 ORTHO05D006789 2.1e-09 67.0 82 50.0
MD11G1104700 Malus domestica HOM05D005468 ORTHO05D006789 2.1e-09 67.0 49 63.3
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 5.8e-07 58.9 26 100.0


User provided reference genes

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