Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 8.4e-246 853.2 418 100.0
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 5.5e-205 717.6 419 83.8
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 2.2e-201 705.7 421 82.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 4.8e-201 704.5 421 83.8
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.4e-200 702.2 425 81.9
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 2.6e-199 698.7 420 83.1
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 4.5e-199 698.0 420 83.1
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 2.5e-197 692.2 421 81.9
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.4e-195 686.4 418 80.1
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.3e-193 679.9 420 81.0
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.3e-193 679.9 429 78.8
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 2.8e-193 678.7 433 78.1
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 9.4e-181 637.1 420 73.6
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.8e-179 632.9 423 72.3
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 1.5e-178 629.8 417 73.6
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 4.4e-178 628.2 425 72.2
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.3e-177 626.7 424 71.9
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 4.8e-177 624.8 421 72.7
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 2.4e-176 622.5 423 71.9
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 9.1e-176 620.5 423 71.4
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.6e-175 619.8 416 73.3
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 2.0e-175 619.4 425 72.2
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.7e-175 619.0 423 71.2
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 5.9e-175 617.8 427 71.4
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 5.9e-175 617.8 430 71.6
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 8.5e-174 614.0 426 72.3
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 3.2e-173 612.1 418 73.0
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.6e-172 609.8 436 70.9
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 4.0e-171 605.1 423 70.9
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 6.8e-171 604.4 427 70.5
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.2e-170 603.6 419 70.4
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 9.8e-170 600.5 422 70.9
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 6.3e-169 597.8 435 69.9
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.4e-168 596.7 423 70.2
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 2.7e-167 592.4 432 68.3
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 7.7e-167 590.9 423 70.4
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 2.9e-166 589.0 419 69.0
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 1.9e-165 586.3 422 67.5
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 4.3e-165 585.1 417 67.6
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.2e-164 583.6 417 68.3
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 2.8e-164 582.4 424 68.4
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 2.8e-164 582.4 429 67.8
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 2.8e-164 582.4 418 68.2
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.8e-163 579.7 383 74.9
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 3.0e-163 578.9 419 68.3
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 3.0e-163 578.9 416 68.8
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.2e-162 577.0 416 68.8
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 2.6e-162 575.9 417 66.7
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 2.2e-161 572.8 421 66.0
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 8.3e-161 570.9 418 65.6
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 1.4e-160 570.1 420 66.0
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 2.4e-160 569.3 424 66.7
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 3.2e-160 568.9 483 62.1
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 9.2e-160 567.4 419 65.6
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.2e-159 567.0 425 66.1
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.6e-159 566.6 428 66.4
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 2.7e-159 565.8 318 84.9
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.7e-158 563.1 415 66.7
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.7e-158 563.1 456 63.4
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 2.3e-158 562.8 428 65.7
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 5.0e-158 561.6 403 66.5
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 6.6e-158 561.2 421 64.8
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 2.5e-157 559.3 422 65.2
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 4.3e-157 558.5 452 64.2
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 5.6e-157 558.1 419 65.6
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 5.6e-157 558.1 421 64.6
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.2e-156 557.0 424 64.2
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 4.0e-155 552.0 420 66.2
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.5e-154 550.1 432 62.5
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.6e-154 549.3 380 71.6
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 3.4e-154 548.9 415 65.8
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 5.8e-154 548.1 443 64.1
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 9.8e-154 547.4 471 60.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 4.9e-153 545.0 423 63.6
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 2.4e-152 542.7 414 64.0
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 7.0e-152 541.2 422 66.8
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 1.2e-151 540.4 418 62.7
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.2e-151 540.4 434 63.8
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.6e-151 540.0 355 74.1
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.5e-151 538.9 416 64.9
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 4.6e-151 538.5 418 62.9
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 6.0e-151 538.1 425 63.8
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 2.3e-150 536.2 416 65.1
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 5.6e-149 531.6 390 67.7
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.1e-148 529.6 432 62.7
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 2.8e-148 529.3 418 62.4
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.1e-148 527.7 415 63.4
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.0e-147 525.4 393 67.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 2.0e-146 523.1 447 61.7
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.4e-146 522.3 455 59.3
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.3e-145 520.4 329 76.3
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 9.2e-144 514.2 390 66.7
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 8.1e-140 501.1 412 62.4
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 5.6e-133 478.4 409 61.1
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.2e-132 477.2 333 68.5
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.1e-132 476.5 306 72.2
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 7.6e-130 468.0 305 73.4
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 9.9e-130 467.6 300 73.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 6.4e-129 464.9 310 72.9
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.6e-127 460.3 420 55.7
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 7.3e-125 451.4 418 56.5
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-124 450.7 329 66.6
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 2.2e-121 439.9 366 60.7
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 8.4e-121 438.0 415 54.2
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 5.6e-117 425.2 433 53.6
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 2.0e-114 416.8 422 50.7
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.0e-114 416.8 403 52.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 2.6e-114 416.4 427 49.9
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.1e-103 380.2 317 60.3
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.7e-97 360.5 277 65.0
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.2e-96 355.9 298 59.7
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 6.9e-91 338.6 316 55.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.7e-81 307.4 277 61.0
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.7e-73 280.8 185 67.6
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.4e-67 261.2 463 35.6
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 4.5e-66 256.1 374 42.2
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 2.9e-65 253.4 229 52.4
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.0e-57 228.4 591 29.9
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.2e-55 221.5 425 35.1
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 2.3e-49 200.7 244 48.4
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 8.9e-46 188.7 129 72.1
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 7.5e-45 185.7 202 49.0
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.3e-41 174.9 119 73.1
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 4.7e-39 166.4 163 56.4
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 6.8e-38 162.5 117 68.4
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.2e-26 125.2 121 60.3
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.7e-26 124.0 139 48.2
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.6e-23 114.8 254 35.8
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 1.6e-18 98.2 120 43.3
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.1e-15 87.8 60 68.3
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 4.9e-12 76.6 103 42.7
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.3e-09 67.8 72 52.8
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 1.6e-07 61.6 39 69.2


User provided reference genes

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