Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 7.2e-177 624.0 362 100.0
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 3.1e-87 326.2 400 54.8
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 9.3e-84 314.7 376 56.1
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.2e-83 314.3 373 54.7
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 6.0e-75 285.4 361 57.1
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.5e-73 280.8 373 50.4
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.3e-73 279.6 254 62.6
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 3.2e-68 263.1 402 50.0
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 6.0e-67 258.8 368 57.1
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.0e-66 258.1 370 56.8
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 6.7e-66 255.4 369 49.9
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.3e-58 231.1 389 48.1
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.0e-46 190.7 321 41.1
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.5e-45 185.3 265 45.3
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 1.4e-44 184.5 271 46.5
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.7e-43 179.5 318 45.3
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.3e-42 177.2 320 39.4
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 6.7e-42 175.6 254 47.2
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 3.3e-41 173.3 255 45.5
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 3.3e-41 173.3 265 44.2
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 1.3e-40 171.4 312 40.7
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.3e-40 171.4 312 40.7
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.7e-40 169.9 312 40.7
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 8.2e-40 168.7 263 43.7
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-39 167.5 376 37.2
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 4.1e-39 166.4 252 46.8
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 9.1e-39 165.2 227 46.7
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 2.0e-38 164.1 227 46.3
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.6e-38 163.7 227 46.3
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.5e-38 162.9 265 41.5
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 7.7e-38 162.2 265 41.1
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.7e-37 161.0 133 63.9
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.5e-37 159.1 376 36.4
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.9e-36 157.5 245 44.1
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 2.7e-35 153.7 221 46.6
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.6e-35 153.3 247 43.3
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.1e-35 152.5 231 42.9
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.0e-34 151.8 254 44.9
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 3.0e-34 150.2 231 42.4
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 3.0e-34 150.2 247 42.9
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 4.0e-34 149.8 268 43.3
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.7e-34 149.1 231 42.4
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 9.7e-33 145.2 217 47.5
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.8e-31 141.0 366 39.6
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 5.3e-31 139.4 258 40.7
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 7.0e-31 139.0 215 45.1
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 1.2e-30 138.3 264 42.0
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.2e-30 138.3 202 44.6
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 5.9e-30 136.0 243 40.3
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 7.7e-30 135.6 211 45.0
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 7.7e-30 135.6 211 45.0
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 1.1e-28 131.7 246 38.6
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 2.5e-28 130.6 306 41.5
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 4.7e-27 126.3 232 42.2
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 6.1e-27 125.9 260 38.5
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.4e-26 124.8 239 40.6
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 3.0e-26 123.6 201 41.8
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 5.2e-26 122.9 246 39.0
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.0e-25 120.9 223 39.9
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.7e-24 117.9 229 39.7
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 1.7e-24 117.9 350 36.9
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 2.2e-24 117.5 225 40.0
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 2.8e-24 117.1 251 38.6
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.1e-23 115.2 253 36.0
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 1.4e-23 114.8 204 38.7
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 1.4e-23 114.8 299 33.4
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.8e-23 114.4 174 43.7
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 4.1e-23 113.2 222 39.2
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 4.1e-23 113.2 225 39.6
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 1.2e-22 111.7 300 33.3
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 1.6e-22 111.3 371 35.6
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 5.9e-22 109.4 230 38.7
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 5.9e-22 109.4 250 37.2
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 1.7e-21 107.8 232 36.6
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 2.3e-21 107.5 368 31.5
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 2.3e-21 107.5 209 41.1
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 6.5e-21 105.9 241 34.9
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 8.6e-21 105.5 391 35.0
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.5e-20 104.8 315 33.7
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.9e-20 104.4 367 31.3
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 1.9e-20 104.4 242 35.5
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.5e-20 102.8 224 37.9
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 5.5e-20 102.8 223 36.3
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 7.2e-20 102.4 254 34.3
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 7.2e-20 102.4 233 37.3
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 9.5e-20 102.1 123 50.4
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 1.6e-19 101.3 243 33.3
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 2.1e-19 100.9 223 34.5
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 4.7e-19 99.8 200 41.0
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.7e-19 99.8 303 31.0
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.4e-18 98.2 253 33.2
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.8e-18 97.8 239 34.3
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 2.3e-18 97.4 225 36.9
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 1.2e-17 95.1 226 37.6
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.6e-17 94.0 254 32.3
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.4e-17 93.6 265 32.5
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.4e-17 93.6 370 30.0
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.2e-16 90.9 109 45.9
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 2.2e-16 90.9 208 38.0
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 2.8e-16 90.5 257 31.1
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 2.8e-16 90.5 257 31.1
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 3.7e-16 90.1 253 32.0
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 3.7e-16 90.1 256 30.5
Lalb_Chr04g0261381 Lupinus albus HOM05D004242 ORTHO05D004349 3.7e-16 90.1 216 41.7
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 4.9e-16 89.7 219 35.2
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 1.1e-15 88.6 132 42.4
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 1.4e-15 88.2 256 30.5
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 2.4e-15 87.4 253 31.6
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 7.0e-15 85.9 140 38.6
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 9.2e-15 85.5 207 36.2
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.7e-14 84.0 256 33.6
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 3.5e-14 83.6 230 33.0
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 4.5e-14 83.2 230 33.0
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 7.8e-14 82.4 230 32.6
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 7.8e-14 82.4 225 31.6
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 3.8e-13 80.1 231 29.9
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 3.8e-13 80.1 201 33.3
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 5.0e-13 79.7 238 31.1
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 6.6e-13 79.3 260 30.8
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 1.1e-12 78.6 249 32.5
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 1.1e-12 78.6 250 32.4
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.5e-12 78.2 113 41.6
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.9e-12 77.8 214 30.4
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 1.9e-12 77.8 249 30.5
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 2.5e-12 77.4 251 30.7
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 3.3e-12 77.0 124 39.5
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 3.3e-12 77.0 253 30.8
Sc23g0001950 Simmondsia chinensis HOM05D004242 ORTHO05D004349 9.5e-12 75.5 143 38.5
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 1.2e-11 75.1 239 30.5
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 1.6e-11 74.7 221 34.8
VMungo0331G0961 Vigna mungo HOM05D004242 ORTHO05D004349 2.8e-11 73.9 212 32.1
Glyma.07G052566 Glycine max HOM05D004242 ORTHO05D004349 3.6e-11 73.6 260 28.1
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 4.7e-11 73.2 229 33.2
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.7e-11 73.2 220 32.7
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 6.1e-11 72.8 188 33.5
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 6.1e-11 72.8 188 33.5
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 1.8e-10 71.2 224 30.8
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 3.0e-10 70.5 123 34.1
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 1.2e-09 68.6 172 32.0
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 1.5e-09 68.2 204 30.9
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 1.5e-09 68.2 204 30.9
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 1.5e-09 68.2 208 29.8
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.0e-09 67.8 116 32.8
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.0e-09 67.8 237 27.4
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.0e-09 67.8 234 31.2
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 2.0e-09 67.8 209 29.2
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 2.0e-09 67.8 127 35.4
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 5.8e-09 66.2 207 37.2
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 9.8e-09 65.5 115 33.9
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.3e-08 65.1 231 32.5
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 2.9e-08 63.9 115 37.4
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 2.9e-08 63.9 245 28.6
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 2.9e-08 63.9 118 34.7
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 2.9e-08 63.9 109 36.7
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 4.9e-08 63.2 212 28.8
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 4.9e-08 63.2 116 32.8
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 4.9e-08 63.2 119 35.3
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 6.4e-08 62.8 125 33.6
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 8.3e-08 62.4 218 31.2
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.1e-07 62.0 117 34.2
Glyma.16G021450 Glycine max HOM05D004242 ORTHO05D004349 1.9e-07 61.2 108 41.7
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 1.9e-07 61.2 116 34.5
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.9e-07 61.2 115 36.5
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.9e-07 61.2 117 32.5
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 3.2e-07 60.5 109 32.1
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.1e-07 60.1 117 31.6
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 5.4e-07 59.7 420 30.5
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 7.0e-07 59.3 111 35.1
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 7.0e-07 59.3 240 29.2
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 7.0e-07 59.3 115 34.8
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 9.2e-07 58.9 102 38.2
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 9.2e-07 58.9 118 32.2
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.6e-06 58.2 115 34.8
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.6e-06 58.2 114 36.0
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.0e-06 57.8 231 26.0
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 2.7e-06 57.4 105 33.3
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 2.7e-06 57.4 238 30.3
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 3.5e-06 57.0 123 33.3
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 3.5e-06 57.0 220 28.2
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 4.6e-06 56.6 122 31.1
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 6.0e-06 56.2 107 35.5
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 7.8e-06 55.8 103 37.9
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 7.8e-06 55.8 108 32.4


User provided reference genes

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