Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 2.4e-176 622.1 321 100.0
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 1.7e-158 562.8 321 91.3
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.9e-145 518.8 323 85.1
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 7.1e-144 514.2 322 83.9
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.5e-141 506.5 319 81.2
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 9.0e-139 497.3 320 81.6
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 4.4e-138 495.0 322 81.1
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 9.3e-136 487.3 320 80.9
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 3.5e-135 485.3 321 80.4
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 2.8e-132 475.7 321 79.1
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 1.1e-131 473.8 325 77.2
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.4e-131 473.4 375 70.1
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 3.8e-129 465.3 321 76.9
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.4e-123 446.8 321 74.1
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 7.1e-120 434.5 321 71.3
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.2e-119 433.7 321 72.3
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 3.9e-118 428.7 321 71.7
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 3.9e-118 428.7 321 71.3
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 8.7e-118 427.6 369 64.2
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 3.3e-117 425.6 321 71.7
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 5.6e-117 424.9 320 70.6
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 3.7e-116 422.2 318 71.7
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 4.8e-116 421.8 321 71.3
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.4e-115 419.5 321 70.7
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 4.0e-115 418.7 319 69.3
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.3e-115 418.3 321 70.1
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 6.9e-115 417.9 321 70.7
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 6.9e-115 417.9 312 71.8
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 1.5e-114 416.8 320 69.1
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.8e-114 414.8 321 70.1
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 2.5e-112 409.5 321 68.5
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 3.2e-112 409.1 314 69.1
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 5.5e-112 408.3 320 67.2
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 9.3e-112 407.5 320 68.1
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.2e-111 407.1 320 67.8
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 1.2e-111 407.1 336 67.3
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 2.7e-111 406.0 311 70.7
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 6.0e-111 404.8 314 67.2
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 1.0e-110 404.1 320 67.2
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.0e-110 404.1 320 67.2
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 2.3e-110 402.9 314 66.6
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 3.9e-110 402.1 321 68.5
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 1.1e-109 400.6 314 66.9
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.9e-109 399.8 320 66.6
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 3.3e-109 399.1 320 68.4
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 3.3e-109 399.1 321 68.5
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 3.7e-108 395.6 308 69.2
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 4.8e-108 395.2 319 66.5
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 6.3e-108 394.8 311 68.2
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 6.3e-108 394.8 320 66.6
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 1.1e-107 394.0 318 65.7
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 1.1e-107 394.0 322 65.2
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.2e-106 390.6 320 66.6
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 1.5e-106 390.2 326 64.4
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 5.0e-105 385.2 317 66.2
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 1.4e-104 383.6 322 66.1
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 2.5e-104 382.9 320 64.7
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 4.2e-104 382.1 376 58.0
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 5.5e-104 381.7 320 64.7
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 7.2e-104 381.3 316 64.9
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 7.2e-104 381.3 361 60.7
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.0e-102 377.5 329 60.2
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 3.0e-102 375.9 322 64.0
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 3.9e-102 375.6 316 63.9
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 6.7e-102 374.8 320 63.8
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.1e-101 374.0 320 61.9
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.1e-101 374.0 336 63.1
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 1.3e-100 370.5 321 64.8
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 4.8e-100 368.6 336 59.2
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 1.1e-99 367.5 328 60.7
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 2.0e-98 363.2 320 61.9
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 7.7e-98 361.3 321 61.7
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 1.7e-97 360.1 300 65.7
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 2.9e-97 359.4 323 61.9
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 6.5e-97 358.2 320 60.6
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 8.5e-97 357.8 346 59.5
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 1.1e-96 357.5 320 61.6
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 1.9e-96 356.7 320 61.6
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 2.1e-95 353.2 316 59.2
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 2.7e-95 352.8 323 61.3
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 1.0e-94 350.9 320 60.0
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.0e-94 350.9 325 59.7
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.4e-94 350.5 325 59.4
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 1.8e-94 350.1 325 59.4
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 1.8e-94 350.1 325 59.4
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 1.8e-94 350.1 325 59.4
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 1.8e-94 350.1 301 63.5
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 5.1e-94 348.6 320 58.8
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 1.5e-93 347.1 321 61.4
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 4.4e-93 345.5 325 60.3
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 7.4e-93 344.7 322 59.6
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 7.4e-93 344.7 322 59.6
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 7.4e-93 344.7 322 59.6
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 1.3e-92 344.0 327 57.5
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 3.7e-92 342.4 321 60.7
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 2.4e-91 339.7 320 58.4
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 4.1e-91 339.0 320 58.1
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 8.5e-89 331.3 320 55.6
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 4.2e-88 328.9 306 58.2
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 4.7e-87 325.5 257 69.3
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 4.7e-87 325.5 329 57.4
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 2.0e-85 320.1 308 58.4
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.7e-84 317.0 321 57.3
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.1e-83 314.3 267 64.0
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.4e-83 313.2 319 57.4
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 4.5e-82 308.9 313 55.3
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.5e-81 304.7 360 53.1
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.0e-78 297.7 321 52.6
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 3.0e-78 296.2 267 62.5
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.6e-74 283.9 207 72.5
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.8e-70 270.4 321 51.4
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 4.4e-69 265.8 309 50.8
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 1.1e-67 261.2 319 49.8
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 4.2e-64 249.2 310 45.8
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 2.1e-63 246.9 270 50.0
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 3.4e-61 239.6 316 46.5
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 9.8e-53 211.5 337 42.1
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 6.8e-46 188.7 110 89.1
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 1.5e-45 187.6 324 37.3
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 2.7e-42 176.8 178 57.3
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.6e-42 176.0 268 42.9
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 6.2e-39 165.6 110 77.3
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 7.6e-37 158.7 185 45.9
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 2.2e-36 157.1 202 50.0
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 5.4e-35 152.5 105 74.3
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 7.1e-35 152.1 135 62.2
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.7e-33 147.5 100 74.0
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 8.6e-33 145.2 108 69.4
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 4.9e-28 129.4 101 70.3
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 2.7e-26 123.6 258 36.0
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 2.0e-21 107.5 337 30.3
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 4.8e-15 86.3 46 91.3
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 4.8e-15 86.3 46 91.3
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 4.8e-15 86.3 46 91.3
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 3.1e-14 83.6 67 62.7
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 6.9e-14 82.4 45 88.9
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 6.9e-14 82.4 98 54.1
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 9.0e-14 82.0 54 75.9
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 2.6e-13 80.5 94 48.9
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 4.5e-13 79.7 54 72.2
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 2.7e-10 70.5 53 67.9
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 3.5e-10 70.1 70 50.0
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 3.3e-08 63.5 46 71.7
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 9.6e-08 62.0 130 33.8
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 2.8e-07 60.5 36 80.6
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 1.1e-06 58.5 45 53.3


User provided reference genes

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