Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 4.2e-233 811.2 465 100.0
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.1e-159 567.4 388 74.5
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 3.8e-157 558.9 467 64.9
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 4.2e-156 555.4 409 69.7
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 1.5e-153 547.0 395 71.9
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 2.5e-153 546.2 388 69.8
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 4.3e-153 545.4 390 71.8
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 5.7e-153 545.0 387 68.0
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 2.8e-152 542.7 387 68.0
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.9e-148 530.0 447 61.3
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 2.5e-148 529.6 389 67.4
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 4.8e-144 515.4 450 61.6
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.1e-143 514.2 467 60.6
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 1.7e-141 506.9 459 61.9
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 3.8e-141 505.8 423 62.4
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 7.2e-140 501.5 407 63.9
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.2e-136 490.0 445 57.1
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 6.3e-136 488.4 452 56.0
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.1e-135 487.6 389 61.7
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 3.1e-135 486.1 449 58.4
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 7.7e-134 481.5 457 58.9
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.3e-133 480.7 389 61.7
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.9e-132 476.9 464 56.5
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 7.2e-132 474.9 389 59.1
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.2e-131 474.2 445 55.7
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 1.2e-131 474.2 420 58.8
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.6e-131 473.8 445 58.0
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.8e-130 470.3 454 56.4
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.3e-130 469.9 446 55.8
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 4.0e-130 469.2 451 54.3
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 6.7e-130 468.4 446 57.8
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 8.8e-130 468.0 449 55.2
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 3.3e-129 466.1 312 74.4
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 3.7e-128 462.6 389 58.6
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 2.4e-127 459.9 359 64.3
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 3.1e-127 459.5 390 58.2
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 1.6e-126 457.2 407 59.2
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 9.4e-124 448.0 391 57.0
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 3.6e-123 446.0 447 51.2
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 3.6e-123 446.0 395 58.7
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 4.7e-123 445.7 456 52.9
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 3.0e-122 443.0 461 51.0
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 4.0e-122 442.6 447 53.7
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 4.0e-122 442.6 407 53.8
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 5.2e-122 442.2 404 55.9
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 6.3e-120 435.3 467 52.0
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 1.4e-119 434.1 465 53.5
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 2.0e-118 430.3 454 51.8
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 7.7e-118 428.3 426 51.2
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 6.5e-117 425.2 390 54.9
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 8.6e-117 424.9 426 50.7
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 1.5e-116 424.1 406 52.5
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.5e-116 424.1 388 55.4
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 1.9e-116 423.7 409 51.1
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 1.2e-115 421.0 392 53.3
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.6e-115 419.5 399 55.4
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 1.0e-114 417.9 451 49.4
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 2.0e-113 413.7 453 49.4
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 3.4e-113 412.9 343 60.1
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 5.7e-113 412.1 413 52.3
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 7.5e-113 411.8 452 50.0
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 1.3e-112 411.0 449 51.2
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.3e-112 411.0 450 52.9
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 2.8e-112 409.8 391 53.5
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 3.7e-112 409.5 380 53.2
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 4.9e-112 409.1 452 49.8
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 6.3e-112 408.7 406 51.0
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 1.4e-111 407.5 454 50.2
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 3.1e-111 406.4 454 50.0
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 3.1e-111 406.4 454 50.0
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 3.1e-111 406.4 412 51.2
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 4.1e-111 406.0 389 52.4
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 4.5e-110 402.5 405 52.1
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 4.5e-110 402.5 405 52.1
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 2.9e-109 399.8 454 52.9
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 5.0e-109 399.1 386 53.4
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 6.6e-109 398.7 460 48.3
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 5.6e-108 395.6 408 50.5
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.6e-107 392.9 348 56.9
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.6e-107 392.9 348 56.9
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 2.6e-105 386.7 343 56.9
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 2.6e-105 386.7 317 59.6
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 7.5e-105 385.2 406 49.3
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 7.5e-105 385.2 410 53.4
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 5.4e-103 379.0 448 49.8
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.2e-102 377.9 432 50.0
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.0e-101 374.8 452 47.3
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.3e-101 374.4 344 55.8
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 2.5e-100 370.2 402 46.5
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 4.7e-99 365.9 334 55.7
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.5e-97 360.9 311 55.9
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 3.1e-90 336.7 388 45.6
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 3.0e-85 320.1 310 53.2
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 8.9e-82 308.5 314 55.4
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.4e-74 284.6 268 50.7
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 1.5e-60 238.0 185 64.3
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 2.9e-56 223.8 370 37.0
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 4.9e-56 223.0 412 32.8
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 4.2e-55 219.9 318 39.6
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 4.6e-54 216.5 415 31.8
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 4.8e-51 206.5 345 35.7
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 3.1e-50 203.8 296 42.2
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.9e-44 184.5 200 50.5
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 4.1e-42 176.8 369 33.6
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 4.3e-36 156.8 446 28.3
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 2.0e-28 131.3 172 44.8
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.7e-27 127.1 171 43.3
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.1e-26 125.6 168 41.7
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 1.8e-26 124.8 177 39.0
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 2.9e-08 64.3 77 45.5
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 6.5e-08 63.2 61 54.1
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 4.2e-07 60.5 54 53.7
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 7.2e-07 59.7 47 59.6
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 4.7e-06 57.0 43 60.5


User provided reference genes

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