Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 2.8e-55 218.4 113 100.0
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 2.5e-35 152.1 124 71.8
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.5e-32 142.9 119 67.2
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 3.4e-32 141.7 112 72.3
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 7.5e-32 140.6 119 66.4
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.7e-31 139.4 121 66.1
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 6.3e-31 137.5 124 67.7
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 8.3e-31 137.1 116 67.2
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 8.3e-31 137.1 124 66.1
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 8.3e-31 137.1 116 66.4
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 8.3e-31 137.1 119 63.9
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.1e-30 136.7 116 68.1
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 1.4e-30 136.3 121 60.3
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.4e-30 136.3 123 65.9
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.8e-30 136.0 117 67.5
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.8e-30 136.0 119 63.9
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.4e-30 135.6 114 65.8
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 4.1e-30 134.8 76 86.8
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 5.4e-30 134.4 118 67.8
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 5.4e-30 134.4 120 69.2
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 5.4e-30 134.4 120 69.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 9.2e-30 133.7 123 64.2
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.6e-29 132.9 120 65.8
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.6e-29 132.9 121 65.3
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 2.0e-29 132.5 86 77.9
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 3.5e-29 131.7 104 68.3
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 4.5e-29 131.3 116 62.9
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.5e-29 131.3 84 77.4
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 7.8e-29 130.6 104 68.3
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 7.8e-29 130.6 118 66.1
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.3e-28 129.8 113 65.5
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.3e-28 129.8 114 59.6
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.7e-28 129.4 116 63.8
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 2.3e-28 129.0 120 62.5
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 2.3e-28 129.0 85 72.9
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 2.3e-28 129.0 113 61.1
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.9e-28 128.6 116 62.9
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.9e-28 128.6 83 79.5
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.9e-28 128.6 84 76.2
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 6.6e-28 127.5 84 72.6
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.6e-28 127.5 119 61.3
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 6.6e-28 127.5 119 61.3
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 6.6e-28 127.5 122 63.9
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 6.6e-28 127.5 76 81.6
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 8.6e-28 127.1 117 62.4
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.6e-28 127.1 71 87.3
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 8.6e-28 127.1 119 61.3
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.5e-27 126.3 116 62.9
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.9e-27 125.9 76 81.6
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.9e-27 125.9 124 62.9
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.5e-27 125.6 116 58.6
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.3e-27 124.8 71 85.9
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 4.3e-27 124.8 115 60.9
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 9.5e-27 123.6 120 60.8
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 9.5e-27 123.6 92 69.6
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 9.5e-27 123.6 155 51.0
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 9.5e-27 123.6 116 63.8
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 9.5e-27 123.6 111 60.4
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 9.5e-27 123.6 82 78.0
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.2e-26 123.2 93 65.6
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.6e-26 122.9 116 59.5
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 6.1e-26 120.9 117 61.5
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 8.0e-26 120.6 116 59.5
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 8.0e-26 120.6 86 72.1
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 8.0e-26 120.6 86 72.1
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 1.0e-25 120.2 122 58.2
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-25 119.8 119 60.5
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 1.4e-25 119.8 111 62.2
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 2.3e-25 119.0 113 61.9
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.3e-25 119.0 111 60.4
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 3.0e-25 118.6 71 78.9
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 3.0e-25 118.6 111 62.2
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 4.0e-25 118.2 118 57.6
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.0e-25 118.2 66 86.4
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 4.0e-25 118.2 71 78.9
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 5.2e-25 117.9 110 60.0
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 5.2e-25 117.9 111 59.5
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 5.2e-25 117.9 111 61.3
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 6.8e-25 117.5 122 56.6
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 6.8e-25 117.5 122 56.6
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 6.8e-25 117.5 105 57.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 6.8e-25 117.5 85 68.2
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 6.8e-25 117.5 111 61.3
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.2e-24 116.7 122 56.6
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.2e-24 116.7 92 65.2
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.5e-24 116.3 91 67.0
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 2.0e-24 115.9 71 77.5
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 2.6e-24 115.5 90 67.8
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 3.4e-24 115.2 71 78.9
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 7.5e-24 114.0 110 61.8
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 7.5e-24 114.0 76 76.3
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 9.8e-24 113.6 71 77.5
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 9.8e-24 113.6 71 77.5
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 9.8e-24 113.6 71 77.5
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.3e-23 113.2 112 60.7
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.3e-23 113.2 114 57.0
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 2.2e-23 112.5 71 77.5
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 2.2e-23 112.5 71 77.5
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.9e-23 112.1 71 77.5
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 3.7e-23 111.7 90 65.6
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 3.7e-23 111.7 71 78.9
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 3.7e-23 111.7 84 67.9
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 4.9e-23 111.3 111 62.2
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 4.9e-23 111.3 111 62.2
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 6.4e-23 110.9 110 59.1
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 6.4e-23 110.9 110 59.1
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 6.4e-23 110.9 110 59.1
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 6.4e-23 110.9 71 77.5
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.1e-22 110.2 71 73.2
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.4e-22 109.8 110 60.0
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 4.1e-22 108.2 115 56.5
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.1e-22 108.2 66 80.3
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 5.4e-22 107.8 116 54.3
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 5.4e-22 107.8 83 66.3
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 7.0e-22 107.5 71 73.2
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 9.2e-22 107.1 84 59.5
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 9.2e-22 107.1 126 54.0
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.0e-20 103.6 60 80.0
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 2.5e-19 99.0 91 59.3
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 2.5e-19 99.0 103 59.2
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 3.3e-19 98.6 59 74.6
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 2.8e-18 95.5 80 62.5
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 3.6e-18 95.1 78 62.8
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.6e-18 95.1 81 58.0
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 6.2e-18 94.4 54 79.6
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 8.0e-18 94.0 78 65.4
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.3e-17 92.4 71 63.4
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.1e-17 92.0 51 84.3
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 5.2e-17 91.3 98 57.1
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 8.9e-17 90.5 101 47.5
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 1.3e-15 86.7 111 53.2
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.2e-15 85.9 42 95.2
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.1e-14 83.6 69 62.3
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 2.4e-14 82.4 89 52.8
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.0e-13 79.3 46 78.3
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 6.2e-10 67.8 37 89.2
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 8.3e-07 57.4 75 44.0
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 2.4e-06 55.8 77 39.0


User provided reference genes

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