Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 7.3e-50 200.3 104 100.0
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 8.7e-27 123.6 99 62.6
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 2.0e-23 112.5 103 57.3
VMungo1143G0002 Vigna mungo HOM05D021496 ORTHO05D022761 2.0e-23 112.5 103 56.3
Phvul.009G101400 Phaseolus vulgaris HOM05D021496 ORTHO05D022761 1.1e-21 106.7 103 55.3
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 1.3e-14 83.2 101 48.5
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.3e-11 72.4 98 43.9
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.3e-09 66.6 97 41.2
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.2e-09 65.9 96 43.8
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-08 63.5 98 42.9
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.4e-08 63.2 110 41.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.8e-08 62.8 98 42.9
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.8e-08 62.8 102 40.2
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.3e-08 61.2 98 42.9
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 6.9e-08 60.8 98 37.8
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.1e-08 60.5 98 42.9
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.2e-07 60.1 99 41.4
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-07 59.3 96 40.6
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.0e-07 59.3 103 39.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 4.5e-07 58.2 102 38.2
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 5.9e-07 57.8 102 36.3
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 5.9e-07 57.8 98 39.8
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.9e-07 57.8 99 38.4
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 7.7e-07 57.4 96 40.6
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 7.7e-07 57.4 96 40.6
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.3e-06 56.6 101 41.6
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.3e-06 56.6 103 37.9
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.3e-06 56.6 115 39.1
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.7e-06 56.2 98 35.7
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.7e-06 56.2 98 38.8
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-06 55.8 96 40.6
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.2e-06 55.8 97 39.2
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 2.2e-06 55.8 112 33.0
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.2e-06 55.8 64 42.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.9e-06 55.5 104 36.5
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.9e-06 55.5 100 40.0
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.9e-06 55.5 97 39.2
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.8e-06 55.1 101 42.6
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 5.0e-06 54.7 113 33.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 5.0e-06 54.7 103 41.7
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.0e-06 54.7 112 36.6
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.0e-06 54.7 112 36.6
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 6.5e-06 54.3 98 38.8
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.5e-06 54.3 109 40.4
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 6.5e-06 54.3 109 40.4
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 8.5e-06 53.9 102 41.2
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 8.5e-06 53.9 107 35.5


User provided reference genes

Program Settings