Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 8.7e-209 730.3 446 100.0
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 3.5e-125 452.6 453 63.8
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 8.7e-124 448.0 450 66.9
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.1e-121 441.0 446 61.2
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 2.0e-120 436.8 456 65.8
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 2.0e-120 436.8 451 60.1
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 2.2e-119 433.3 450 63.1
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 8.4e-119 431.4 459 63.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 3.3e-115 419.5 462 56.9
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 8.1e-106 388.3 455 60.0
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 2.4e-105 386.7 457 61.7
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.3e-100 370.2 457 59.5
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 7.4e-75 285.4 468 45.3
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 3.7e-74 283.1 469 43.5
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 1.5e-70 271.2 458 43.9
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 4.7e-69 266.2 476 41.6
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 8.8e-68 261.9 476 45.8
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.3e-66 258.1 460 39.1
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 1.3e-66 258.1 470 43.0
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.7e-66 256.5 467 43.0
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 8.2e-66 255.4 465 40.0
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.4e-65 254.6 479 43.2
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 9.1e-65 251.9 459 43.1
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.6e-64 251.1 462 45.5
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 2.0e-64 250.8 454 40.5
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 3.5e-64 250.0 461 39.7
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 7.7e-64 248.8 460 39.8
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.0e-63 248.4 465 41.9
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.0e-63 248.4 483 40.8
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 1.9e-62 244.2 463 46.0
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 7.2e-62 242.3 467 41.5
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 1.6e-61 241.1 475 40.8
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.6e-61 240.0 450 42.9
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 4.7e-61 239.6 468 47.4
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 8.0e-61 238.8 456 38.8
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.4e-60 238.0 465 41.5
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 1.8e-60 237.7 453 38.6
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 5.7e-59 232.6 451 38.6
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.7e-58 231.1 462 37.7
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.7e-58 231.1 461 38.2
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 8.3e-58 228.8 455 39.3
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 1.8e-57 227.6 458 36.7
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.4e-57 227.3 465 36.8
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 3.6e-53 213.4 469 37.7
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.6e-53 213.4 451 38.1
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 3.6e-53 213.4 453 37.7
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.4e-52 211.5 461 38.2
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 3.0e-52 210.3 466 36.1
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.5e-51 208.0 389 39.3
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.5e-51 208.0 459 37.5
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 7.5e-51 205.7 468 38.5
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 7.5e-51 205.7 464 38.8
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 3.1e-49 200.3 477 36.1
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 2.3e-47 194.1 494 36.6
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 2.3e-47 194.1 453 35.8
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 2.5e-46 190.7 441 34.5
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 3.3e-46 190.3 457 36.1
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 5.5e-46 189.5 457 35.9
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 1.2e-45 188.3 451 36.6
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 2.1e-45 187.6 452 36.5
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.4e-44 184.9 457 36.1
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 1.4e-44 184.9 459 35.3
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 3.0e-44 183.7 443 34.1
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.4e-43 180.3 346 37.0
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 9.8e-43 178.7 459 35.3
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 9.8e-43 178.7 450 34.7
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 9.8e-43 178.7 348 38.8
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 1.3e-42 178.3 464 34.7
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.7e-42 177.9 459 34.6
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 2.9e-42 177.2 492 33.7
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 3.7e-42 176.8 521 33.2
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 8.3e-42 175.6 467 31.9
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 8.3e-42 175.6 448 36.8
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 1.4e-41 174.9 459 33.8
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 1.8e-41 174.5 462 35.1
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.8e-41 174.5 453 34.2
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 2.4e-41 174.1 457 33.9
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.2e-41 173.7 469 34.1
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 7.0e-41 172.6 458 34.3
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.2e-40 171.8 465 34.8
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 4.6e-40 169.9 469 33.0
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 5.9e-40 169.5 464 34.9
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 1.3e-39 168.3 468 33.8
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 6.6e-39 166.0 444 34.9
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 6.6e-39 166.0 446 32.5
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 6.6e-39 166.0 445 31.7
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.1e-38 165.2 492 33.5
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.5e-38 164.9 454 35.2
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.9e-38 164.5 477 32.5
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 5.6e-38 162.9 453 30.0
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 5.6e-38 162.9 453 32.9
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 7.3e-38 162.5 458 31.9
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.6e-37 161.4 452 35.4
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 2.8e-37 160.6 455 34.7
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.0e-36 158.7 453 35.8
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.0e-36 158.7 468 32.1
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 3.1e-36 157.1 461 32.8
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.2e-35 155.2 468 36.8
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.0e-35 154.5 442 31.2
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.3e-34 151.8 466 32.8
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 2.2e-34 151.0 465 33.1
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 4.9e-34 149.8 407 32.4
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 1.1e-33 148.7 453 30.9
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 2.4e-33 147.5 472 34.3
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 3.2e-33 147.1 437 31.8
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 4.1e-33 146.7 398 32.9
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 4.1e-33 146.7 453 32.7
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 4.1e-33 146.7 330 34.8
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.6e-32 144.8 457 32.2
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 2.7e-32 144.1 449 30.5
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 3.5e-32 143.7 457 32.2
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 4.6e-32 143.3 445 31.5
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 4.6e-32 143.3 460 34.1
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 4.6e-32 143.3 478 30.3
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.0e-31 142.1 457 32.2
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.3e-31 141.7 457 31.9
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 3.0e-31 140.6 459 34.2
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.0e-31 140.6 345 35.4
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 5.0e-31 139.8 450 32.2
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.5e-30 137.5 344 35.2
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.3e-30 137.1 348 35.3
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.6e-29 133.7 461 29.1
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 2.3e-28 131.0 427 28.8
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 5.2e-28 129.8 458 29.7
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 6.8e-28 129.4 457 28.7
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.0e-27 127.9 439 29.4
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.3e-26 125.2 448 29.7
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.9e-26 124.0 448 29.7
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.9e-26 124.0 443 30.5
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 3.7e-26 123.6 452 29.6
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 3.7e-26 123.6 356 33.7
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.1e-25 122.1 452 31.0
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.9e-25 121.3 264 34.5
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.9e-25 121.3 329 34.3
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 4.1e-25 120.2 447 28.2
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 9.2e-25 119.0 477 31.0
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 9.2e-25 119.0 455 32.3
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 1.2e-24 118.6 345 31.6
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 1.6e-24 118.2 234 37.2
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 6.0e-24 116.3 444 30.4
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.3e-23 115.2 455 29.9
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 2.3e-23 114.4 444 30.2
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 8.6e-23 112.5 271 33.2
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 1.5e-22 111.7 446 26.7
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.5e-22 111.7 468 29.7
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 7.3e-22 109.4 327 31.5
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 7.3e-22 109.4 268 35.1
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 9.5e-22 109.0 449 29.0
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 1.6e-21 108.2 449 28.3
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 3.6e-21 107.1 340 36.8
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 1.4e-20 105.1 265 32.1
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 2.3e-20 104.4 275 31.6
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.3e-20 104.4 344 31.4
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 2.3e-20 104.4 337 29.7
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 4.4e-19 100.1 350 30.0
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.7e-18 98.2 261 33.7
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 3.7e-18 97.1 349 30.7
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 4.9e-18 96.7 261 33.3
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 1.9e-17 94.7 268 34.3
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.4e-17 94.4 339 29.2
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.6e-16 91.7 457 27.4
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 6.0e-16 89.7 338 29.3
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 7.8e-16 89.4 466 26.8
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.0e-15 89.0 392 26.3
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.3e-15 88.6 461 28.0
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.1e-14 85.5 339 29.2
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 1.1e-12 79.0 464 24.6
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 1.4e-12 78.6 187 34.8
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 1.8e-12 78.2 156 39.7
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 4.0e-12 77.0 447 26.8
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.4e-10 69.3 164 33.5
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 8.4e-10 69.3 367 26.2
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 2.7e-08 64.3 389 26.2
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 1.0e-07 62.4 107 39.3
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.3e-07 62.0 121 38.0
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 3.9e-07 60.5 72 43.1
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.9e-07 60.5 125 35.2
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 5.1e-07 60.1 210 30.5
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 6.6e-07 59.7 72 43.1
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 6.6e-07 59.7 72 43.1
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 1.5e-06 58.5 123 36.6
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.3e-06 57.4 75 44.0


User provided reference genes

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