Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 4.5e-172 607.8 310 100.0
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 5.8e-143 511.1 308 83.1
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 5.1e-139 498.0 306 81.4
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 6.6e-139 497.7 306 81.4
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 7.3e-138 494.2 306 81.4
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 3.6e-137 491.9 306 80.4
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 2.9e-134 482.3 309 77.7
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 2.9e-134 482.3 309 77.7
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 9.3e-133 477.2 306 77.5
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 7.3e-130 467.6 307 74.9
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 1.5e-127 459.9 306 75.5
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 2.4e-117 426.0 304 68.4
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 7.9e-116 421.0 308 68.2
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 1.8e-115 419.9 306 67.3
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 6.7e-115 417.9 307 67.1
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 8.7e-115 417.5 318 67.6
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 8.7e-115 417.5 307 66.1
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 5.6e-114 414.8 306 66.7
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 1.6e-113 413.3 307 66.8
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 2.8e-113 412.5 307 65.5
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 4.8e-113 411.8 308 66.2
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 1.4e-112 410.2 307 67.1
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 1.4e-112 410.2 307 66.1
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 1.2e-111 407.1 307 65.1
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 4.5e-111 405.2 307 64.8
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 5.8e-111 404.8 307 65.1
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 7.6e-111 404.4 304 64.5
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 4.9e-110 401.7 304 64.1
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.1e-109 400.6 304 64.1
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 1.1e-109 400.6 307 65.8
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 2.7e-108 396.0 307 62.5
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 6.0e-108 394.8 307 64.5
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 6.7e-107 391.3 307 62.2
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 3.3e-106 389.0 307 64.8
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 7.4e-106 387.9 307 65.1
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 9.7e-106 387.5 307 62.2
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.2e-105 386.3 307 61.9
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.8e-105 386.0 307 61.9
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.7e-105 385.6 307 61.9
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 6.3e-105 384.8 430 51.4
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 1.8e-104 383.3 306 62.7
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 3.1e-104 382.5 307 62.2
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 6.9e-104 381.3 307 61.2
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 9.0e-104 380.9 307 61.6
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 3.8e-102 375.6 307 60.9
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 6.5e-102 374.8 307 59.9
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 8.5e-102 374.4 307 59.6
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 1.4e-101 373.6 307 58.3
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 1.2e-100 370.5 353 56.7
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 1.2e-100 370.5 307 59.6
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 2.1e-100 369.8 311 59.5
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 6.1e-100 368.2 307 59.6
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 6.1e-100 368.2 311 59.5
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 3.0e-99 365.9 313 58.5
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 5.1e-99 365.2 307 59.0
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 1.1e-98 364.0 348 56.0
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 1.1e-98 364.0 305 61.6
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 3.3e-98 362.5 271 66.4
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 7.4e-98 361.3 307 58.0
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 7.4e-98 361.3 307 57.0
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 3.1e-96 355.9 307 57.7
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 4.1e-96 355.5 308 57.5
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 6.9e-96 354.8 307 57.3
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 1.2e-95 354.0 292 58.6
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 2.6e-95 352.8 306 55.6
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 8.5e-94 347.8 358 51.4
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 4.2e-93 345.5 306 57.5
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 9.1e-88 327.8 292 55.5
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 6.5e-86 321.6 301 54.8
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 1.9e-85 320.1 308 53.6
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 2.5e-85 319.7 309 53.1
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 1.4e-83 313.9 308 51.3
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 2.3e-83 313.2 308 51.0
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 2.3e-83 313.2 308 51.0
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 8.8e-83 311.2 314 51.6
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 4.4e-82 308.9 308 51.3
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 1.1e-80 304.3 299 53.2
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 5.3e-80 302.0 243 61.3
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 7.0e-80 301.6 306 51.0
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 9.1e-80 301.2 308 49.4
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 9.1e-80 301.2 308 51.0
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 3.5e-79 299.3 237 64.6
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 1.3e-78 297.4 308 48.1
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 1.3e-78 297.4 250 59.2
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 3.8e-78 295.8 293 50.5
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 1.9e-77 293.5 308 47.1
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 3.2e-77 292.7 291 50.9
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 1.2e-76 290.8 309 48.2
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 4.7e-76 288.9 308 55.2
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 4.0e-75 285.8 241 61.8
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 8.8e-75 284.6 299 50.5
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 5.3e-72 275.4 266 54.9
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 5.3e-72 275.4 321 48.6
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.7e-71 273.1 266 54.1
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 7.7e-71 271.6 221 59.3
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 1.0e-67 261.2 292 44.9
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 1.5e-66 257.3 238 54.6
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 4.8e-65 252.3 177 70.1
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 2.9e-62 243.0 303 44.6
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 8.6e-62 241.5 217 57.1
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 3.7e-57 226.1 231 52.4
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 4.5e-55 219.2 242 46.7
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 3.2e-48 196.4 297 36.7
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.2e-39 167.9 114 65.8
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 1.2e-34 151.4 280 31.4
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.8e-28 130.2 113 58.4
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 4.1e-24 116.3 67 80.6
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.6e-23 114.4 67 79.1
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 6.0e-23 112.5 67 74.6
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 3.0e-22 110.2 63 76.2
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 5.1e-22 109.4 64 75.0
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 3.8e-09 66.6 63 52.4


User provided reference genes

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