Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 2.9e-61 238.4 126 100.0
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 4.7e-51 204.5 126 85.7
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 4.4e-49 198.0 128 81.2
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 4.4e-49 198.0 128 82.8
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 9.2e-47 190.3 126 77.0
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 9.2e-47 190.3 126 78.6
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 1.1e-44 183.3 124 79.0
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 3.3e-44 181.8 131 75.6
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 1.2e-43 179.9 124 78.2
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 1.2e-43 179.9 127 71.7
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 8.1e-43 177.2 127 72.4
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 5.1e-37 157.9 143 59.4
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 6.6e-37 157.5 135 63.0
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 3.3e-36 155.2 143 58.7
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 3.3e-36 155.2 143 58.0
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 4.3e-36 154.8 128 64.8
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 4.3e-36 154.8 139 59.7
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 5.6e-36 154.5 139 59.7
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 7.3e-36 154.1 131 62.6
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.6e-35 152.9 134 58.2
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.6e-35 152.9 134 58.2
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 2.8e-35 152.1 150 57.3
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.8e-35 152.1 132 61.4
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 2.8e-35 152.1 132 61.4
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 2.8e-35 152.1 152 57.2
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 3.6e-35 151.8 143 56.6
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 3.6e-35 151.8 133 59.4
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 4.7e-35 151.4 150 57.3
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 8.1e-35 150.6 135 60.7
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 8.1e-35 150.6 137 59.9
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 1.1e-34 150.2 137 60.6
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 1.1e-34 150.2 141 60.3
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 1.1e-34 150.2 135 58.5
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 1.4e-34 149.8 143 57.3
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 1.4e-34 149.8 137 62.0
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 1.4e-34 149.8 145 57.9
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 1.8e-34 149.4 131 58.8
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 1.8e-34 149.4 152 55.3
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 1.8e-34 149.4 140 57.1
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 4.0e-34 148.3 145 55.9
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 5.2e-34 147.9 137 58.4
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 6.8e-34 147.5 162 53.1
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 6.8e-34 147.5 134 58.2
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 6.8e-34 147.5 131 58.8
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 6.8e-34 147.5 147 54.4
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 8.9e-34 147.1 145 54.5
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 8.9e-34 147.1 147 57.1
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.2e-33 146.7 116 67.2
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.2e-33 146.7 149 55.0
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 1.5e-33 146.4 133 57.9
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.5e-33 146.4 133 57.9
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 1.5e-33 146.4 127 59.8
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 2.0e-33 146.0 132 59.8
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 2.0e-33 146.0 133 58.6
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.0e-33 146.0 145 55.2
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 2.0e-33 146.0 147 57.8
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 2.6e-33 145.6 161 50.9
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 4.4e-33 144.8 131 58.0
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 5.8e-33 144.4 132 58.3
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 9.9e-33 143.7 142 54.9
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.3e-32 143.3 145 53.8
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.3e-32 143.3 145 53.8
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 1.3e-32 143.3 147 54.4
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 2.9e-32 142.1 133 57.9
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 2.9e-32 142.1 143 55.2
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 3.7e-32 141.7 136 58.1
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 3.7e-32 141.7 132 60.6
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 3.7e-32 141.7 149 55.0
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.7e-32 141.7 139 54.7
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.7e-32 141.7 139 54.7
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 4.9e-32 141.4 115 67.0
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.1e-31 140.2 115 66.1
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.4e-31 139.8 126 60.3
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 1.4e-31 139.8 148 55.4
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 1.4e-31 139.8 142 57.7
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 1.9e-31 139.4 151 53.0
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 2.4e-31 139.0 125 57.6
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 2.4e-31 139.0 146 56.8
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 3.2e-31 138.7 128 57.0
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 3.2e-31 138.7 124 56.5
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 3.2e-31 138.7 145 54.5
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 3.2e-31 138.7 145 54.5
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 4.1e-31 138.3 120 57.5
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 5.4e-31 137.9 133 55.6
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 9.2e-31 137.1 125 56.0
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 1.2e-30 136.7 125 56.8
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 1.6e-30 136.3 149 53.0
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 2.1e-30 136.0 142 55.6
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 3.5e-30 135.2 149 52.3
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 4.6e-30 134.8 136 55.1
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 1.0e-29 133.7 145 51.0
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 1.3e-29 133.3 134 56.7
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 1.3e-29 133.3 150 51.3
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 2.3e-29 132.5 142 52.8
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 2.3e-29 132.5 143 55.2
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 2.3e-29 132.5 151 51.0
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 3.0e-29 132.1 128 54.7
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 3.9e-29 131.7 127 53.5
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 5.1e-29 131.3 122 55.7
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 1.5e-28 129.8 134 53.0
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 3.3e-28 128.6 138 50.0
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 5.6e-28 127.9 117 59.0
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 5.6e-28 127.9 117 55.6
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 5.6e-28 127.9 117 55.6
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 5.6e-28 127.9 117 55.6
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 5.6e-28 127.9 117 55.6
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 2.1e-27 125.9 144 50.7
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 1.1e-26 123.6 127 55.9
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 5.2e-26 121.3 136 48.5
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 1.7e-24 116.3 139 48.2
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 1.4e-23 113.2 139 48.2
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 7.1e-23 110.9 139 46.0
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 9.3e-23 110.5 116 50.9
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 3.9e-21 105.1 105 57.1
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 5.1e-21 104.8 150 46.0
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 8.7e-21 104.0 115 49.6
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 2.5e-20 102.4 106 53.8
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 2.1e-19 99.4 142 46.5
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 6.2e-19 97.8 121 45.5
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 2.0e-17 92.8 119 45.4
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 3.8e-16 88.6 129 45.0
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 1.4e-15 86.7 110 45.5
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 3.9e-13 78.6 120 39.2
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 6.6e-13 77.8 58 63.8
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 1.1e-12 77.0 71 57.7
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 1.1e-12 77.0 70 60.0
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.5e-09 66.6 55 56.4
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 2.2e-08 62.8 44 63.6
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 2.7e-06 55.8 44 59.1
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 6.0e-06 54.7 106 35.8


User provided reference genes

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