Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 1.2e-161 573.2 303 100.0
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 8.3e-102 374.4 286 71.0
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 3.4e-95 352.4 258 73.6
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 9.8e-95 350.9 258 74.0
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 4.9e-94 348.6 258 70.9
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 9.2e-93 344.4 257 73.2
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 4.5e-92 342.0 258 72.5
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 2.3e-91 339.7 239 74.1
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.4e-87 325.5 264 69.7
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.9e-86 322.8 257 70.0
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 6.4e-86 321.6 264 68.9
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-77 293.9 257 65.8
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 5.2e-72 275.4 255 59.2
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 4.4e-71 272.3 240 63.3
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.6e-68 263.8 220 66.8
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 1.2e-60 237.7 254 58.3
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.0e-59 234.6 256 54.3
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 3.0e-59 233.0 246 56.1
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 9.6e-58 228.0 240 57.1
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 6.2e-57 225.3 262 53.8
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 5.2e-56 222.2 261 53.3
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 5.2e-56 222.2 258 50.8
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 6.9e-56 221.9 253 57.3
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 6.9e-56 221.9 253 57.3
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.2e-55 221.1 260 52.7
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 7.6e-55 218.4 248 51.6
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 6.4e-54 215.3 261 50.2
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 8.4e-54 214.9 289 48.1
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 5.4e-53 212.2 265 47.9
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.6e-52 210.7 242 50.4
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.7e-52 209.9 255 51.0
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 2.7e-52 209.9 255 51.0
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 2.7e-52 209.9 259 52.1
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 3.5e-52 209.5 263 49.4
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 3.9e-51 206.1 262 49.2
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 6.6e-51 205.3 255 48.2
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 8.7e-51 204.9 253 49.4
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 1.5e-50 204.1 250 48.4
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 1.9e-50 203.8 257 49.0
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 2.5e-50 203.4 269 46.8
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 3.6e-49 199.5 262 48.1
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 4.8e-49 199.1 260 48.8
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 4.8e-49 199.1 263 46.8
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 8.1e-49 198.4 260 48.8
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 1.4e-48 197.6 261 48.7
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 2.4e-48 196.8 257 49.4
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 2.4e-48 196.8 249 47.8
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 1.2e-47 194.5 220 55.0
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 2.6e-47 193.4 258 47.7
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 2.6e-47 193.4 245 49.8
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 9.9e-47 191.4 254 50.0
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 1.3e-46 191.0 264 45.8
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 2.2e-46 190.3 258 48.4
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 3.8e-46 189.5 247 50.2
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.1e-45 188.0 259 45.9
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.1e-45 188.0 259 45.9
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 5.4e-45 185.7 218 52.8
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 2.1e-44 183.7 256 46.5
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 6.0e-44 182.2 261 45.2
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 7.9e-44 181.8 228 49.6
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 3.0e-43 179.9 245 48.2
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 3.9e-43 179.5 255 49.8
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 6.7e-43 178.7 259 45.2
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 8.7e-43 178.3 259 45.2
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.5e-42 177.6 262 45.4
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.9e-42 177.2 212 48.6
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 2.5e-42 176.8 263 44.1
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 2.5e-42 176.8 226 50.0
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 5.6e-42 175.6 256 46.9
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 9.6e-42 174.9 248 44.4
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 9.6e-42 174.9 257 45.1
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 6.2e-41 172.2 218 46.3
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 1.1e-40 171.4 260 42.3
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 1.8e-40 170.6 261 44.4
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 3.1e-40 169.9 249 43.8
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 4.0e-40 169.5 261 42.5
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 5.3e-40 169.1 256 43.4
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.2e-39 167.9 271 42.4
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 2.0e-39 167.2 258 43.8
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 7.6e-39 165.2 228 43.9
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.6e-39 165.2 213 48.4
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 9.9e-39 164.9 261 42.9
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 2.9e-38 163.3 232 43.1
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 2.9e-38 163.3 233 43.3
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.9e-38 163.3 269 40.9
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.4e-37 161.0 218 45.0
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.4e-37 161.0 233 43.3
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 3.2e-37 159.8 232 43.1
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 4.2e-37 159.5 233 42.9
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 4.2e-37 159.5 233 42.9
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.2e-36 157.9 227 45.4
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.6e-36 157.5 232 42.7
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 2.1e-36 157.1 263 41.8
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 3.5e-36 156.4 259 40.9
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 4.6e-36 156.0 235 43.4
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 2.3e-35 153.7 256 41.8
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 3.0e-35 153.3 263 41.8
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 3.9e-35 152.9 258 41.1
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 2.5e-34 150.2 263 40.3
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 2.5e-34 150.2 229 44.5
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 7.4e-34 148.7 250 44.0
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.4e-34 148.7 265 40.4
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.3e-33 147.9 226 41.6
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 1.6e-33 147.5 235 39.6
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 2.4e-32 143.7 217 41.9
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 2.4e-32 143.7 263 39.9
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 3.1e-32 143.3 256 38.7
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 5.3e-32 142.5 261 37.5
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 4.5e-31 139.4 223 41.3
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.7e-30 137.5 267 38.6
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.4e-29 134.4 236 38.6
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 1.9e-29 134.0 180 44.4
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 1.2e-28 131.3 80 77.5
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 2.7e-28 130.2 140 50.7
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.8e-27 127.5 142 51.4
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 3.9e-27 126.3 260 38.1
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 3.9e-27 126.3 201 37.8
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 1.1e-26 124.8 145 53.1
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 1.5e-26 124.4 215 34.4
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.5e-26 123.6 196 42.9
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.4e-24 117.9 147 49.0
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 2.6e-23 113.6 196 38.8
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 4.5e-23 112.8 180 37.8
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.9e-23 112.5 204 33.3
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 2.9e-22 110.2 209 34.0
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 8.5e-22 108.6 127 50.4
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.1e-18 98.2 204 31.9
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 4.8e-17 92.8 103 50.5
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 6.3e-17 92.4 113 46.9
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 1.4e-16 91.3 114 43.9
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 5.9e-15 85.9 248 28.2
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.4e-13 81.3 80 58.8
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 7.9e-12 75.5 213 26.8
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.3e-09 68.2 204 27.0
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 1.7e-09 67.8 105 41.9
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.8e-08 64.3 85 43.5
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 5.3e-08 62.8 80 46.2
SEGI_22580 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 5.3e-08 62.8 250 22.4
Nn2g13608 Nelumbo nucifera HOM05D005866 ORTHO05D007078 2.2e-06 57.4 65 47.7


User provided reference genes

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