Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.2e-162 576.6 326 100.0
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 9.5e-112 407.5 328 67.4
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 4.7e-103 378.6 327 66.4
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.8e-102 376.7 327 66.1
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 4.0e-94 349.0 327 59.9
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.4e-91 339.7 318 60.4
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 4.6e-90 335.5 316 59.2
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.5e-88 330.5 329 56.8
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.9e-88 330.1 327 56.6
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 5.6e-88 328.6 304 61.8
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.1e-86 322.8 324 59.6
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 7.6e-85 318.2 331 55.6
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 2.9e-84 316.2 332 56.6
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 4.9e-84 315.5 329 55.6
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 4.9e-84 315.5 317 55.8
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.9e-83 313.5 334 53.0
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 3.2e-83 312.8 329 54.1
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.1e-83 312.4 378 51.3
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 9.2e-83 311.2 332 55.1
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 2.1e-82 310.1 271 61.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.1e-82 310.1 329 53.5
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 2.1e-82 310.1 331 55.3
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 1.0e-81 307.8 324 54.0
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.0e-81 307.8 323 54.2
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.0e-81 307.8 330 53.0
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.9e-81 305.8 331 52.0
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.9e-80 303.5 361 51.2
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.5e-80 303.1 329 59.6
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 3.3e-80 302.8 331 55.6
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 8.1e-79 298.1 332 50.9
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.1e-78 297.7 329 53.2
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.1e-78 297.7 323 52.3
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-78 297.4 323 52.3
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.4e-78 297.4 329 52.9
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.8e-78 297.0 331 54.1
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 3.1e-78 296.2 336 56.8
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 3.1e-78 296.2 324 56.5
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 4.0e-78 295.8 331 53.2
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 6.9e-78 295.0 322 54.3
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.6e-77 293.1 330 56.7
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 2.6e-77 293.1 332 50.0
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 5.8e-77 292.0 331 49.5
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.6e-77 291.6 318 57.5
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.9e-76 289.7 332 50.0
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 4.9e-76 288.9 331 52.9
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 8.4e-76 288.1 331 51.1
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.1e-75 287.7 329 52.9
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 4.2e-75 285.8 324 52.2
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 5.4e-75 285.4 329 50.2
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 7.1e-75 285.0 332 50.3
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.5e-74 282.7 324 50.3
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 4.6e-74 282.3 331 52.3
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 6.0e-74 282.0 383 46.0
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.3e-73 280.8 338 50.9
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.0e-73 279.6 332 50.3
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 5.1e-73 278.9 332 49.7
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 6.6e-73 278.5 368 47.0
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 8.7e-73 278.1 332 49.4
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.3e-72 275.8 331 50.2
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-70 270.8 336 50.3
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.8e-70 270.4 332 47.3
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.4e-70 270.0 327 47.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 5.3e-70 268.9 333 45.9
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 9.0e-70 268.1 326 48.5
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 4.5e-69 265.8 325 47.1
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 1.3e-68 264.2 332 46.1
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.3e-68 264.2 331 49.2
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.3e-68 264.2 332 54.2
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.7e-68 263.8 330 49.4
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 8.4e-68 261.5 331 49.5
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.1e-67 261.2 329 47.7
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 4.2e-67 259.2 332 48.2
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 5.4e-67 258.8 332 51.5
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 7.1e-67 258.5 331 46.2
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 7.1e-67 258.5 388 44.1
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 9.3e-67 258.1 402 42.8
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.6e-66 257.3 329 46.5
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 6.0e-66 255.4 388 41.0
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.8e-65 253.8 331 47.4
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 3.9e-65 252.7 321 52.3
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.9e-64 250.4 331 49.5
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.9e-64 250.4 331 50.5
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.5e-64 250.0 331 50.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 9.6e-64 248.1 332 44.3
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 3.7e-63 246.1 333 46.2
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 4.8e-63 245.7 331 49.2
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.2e-63 245.4 284 50.7
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.4e-62 243.4 307 48.5
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 5.3e-62 242.3 332 44.6
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.2e-61 241.1 339 47.8
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.2e-61 241.1 389 46.0
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 1.7e-60 237.3 328 44.2
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.3e-57 226.9 332 42.8
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.3e-57 226.9 332 42.8
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 8.7e-57 224.9 362 43.4
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.5e-56 223.4 348 45.1
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 3.3e-56 223.0 326 46.0
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.3e-56 223.0 319 42.9
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 9.6e-56 221.5 331 43.8
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 9.6e-56 221.5 340 47.1
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.6e-55 220.7 323 46.4
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.1e-55 220.3 328 44.2
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.7e-55 219.5 263 55.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 6.2e-55 218.8 331 44.1
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.8e-54 217.2 319 43.3
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 3.4e-53 213.0 331 47.1
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 3.4e-53 213.0 261 45.6
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 5.8e-53 212.2 331 47.1
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.0e-52 211.5 262 55.0
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.7e-52 210.7 325 46.8
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 4.9e-52 209.1 332 46.1
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 2.1e-50 203.8 361 44.0
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 6.0e-50 202.2 301 43.9
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.9e-48 197.2 330 40.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 9.7e-48 194.9 271 46.5
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.6e-47 194.1 270 45.2
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 4.1e-46 189.5 287 43.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 5.3e-46 189.1 301 41.5
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.6e-45 186.8 389 40.1
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 2.2e-44 183.7 298 41.6
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 6.5e-44 182.2 328 39.0
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 6.5e-44 182.2 328 39.0
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.9e-43 180.6 298 40.6
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 6.1e-42 175.6 308 43.2
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 2.3e-41 173.7 298 39.9
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-40 171.4 328 38.7
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.9e-40 170.6 193 51.8
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.9e-40 170.6 303 36.0
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 9.7e-40 168.3 302 37.4
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.7e-40 168.3 279 40.9
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.8e-39 166.8 306 41.2
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 3.7e-39 166.4 288 40.6
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 6.3e-39 165.6 307 37.5
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 3.1e-38 163.3 176 52.8
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 1.1e-35 154.8 168 49.4
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.2e-31 140.6 262 46.6
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 3.7e-31 139.8 315 34.6
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 2.0e-29 134.0 288 38.2
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.3e-28 131.3 235 40.4
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-27 127.9 135 57.8
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-26 124.4 136 57.4
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 2.7e-26 123.6 205 36.6
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 8.0e-26 122.1 197 41.1
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 6.7e-25 119.0 105 62.9
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.0e-24 117.5 287 35.9
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 9.7e-24 115.2 148 43.2
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 3.7e-23 113.2 311 31.2
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-23 113.2 146 44.5
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 1.8e-22 110.9 323 31.0
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 3.1e-22 110.2 150 44.7
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.0e-22 109.0 164 43.3
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.1e-22 108.6 164 43.3
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 7.7e-21 105.5 220 37.3
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.3e-20 104.8 370 25.7
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.5e-19 100.5 260 32.3
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 7.2e-19 99.0 151 39.7
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 2.7e-18 97.1 249 32.9
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.8e-17 94.4 148 36.5
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 4.0e-17 93.2 115 54.8
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.2e-17 92.8 376 26.3
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.6e-16 90.5 156 40.4
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 4.4e-16 89.7 222 32.9
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 4.4e-16 89.7 222 32.9
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.2e-15 87.4 214 35.0
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 6.3e-15 85.9 199 35.7
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.6e-13 81.3 95 52.6
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 4.5e-13 79.7 130 40.8
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.5e-11 74.7 204 32.4
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 1.5e-11 74.7 183 32.2
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 1.5e-11 74.7 183 32.2
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 1.9e-11 74.3 326 25.2
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 6.1e-10 69.3 222 29.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 2.3e-09 67.4 99 40.4
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 1.5e-08 64.7 102 44.1
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 2.0e-08 64.3 86 43.0
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 3.1e-06 57.0 91 46.2


User provided reference genes

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