Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 3.9e-176 621.3 307 100.0
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 2.7e-156 555.4 309 88.7
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 3.6e-153 545.0 309 84.8
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 8.8e-152 540.4 309 85.8
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 8.8e-152 540.4 309 86.1
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 8.3e-150 533.9 309 83.8
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 1.8e-149 532.7 315 82.9
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.7e-147 526.2 309 83.2
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 1.1e-138 496.9 340 73.8
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 4.7e-137 491.5 309 76.4
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 6.1e-137 491.1 310 75.2
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.8e-136 489.6 309 75.1
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 1.7e-134 483.0 307 75.6
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.2e-134 482.6 309 74.1
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 3.7e-134 481.9 304 77.3
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 5.4e-133 478.0 309 75.1
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 2.0e-132 476.1 310 72.9
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 2.7e-132 475.7 315 73.3
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 1.7e-131 473.0 309 73.8
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 2.3e-131 472.6 309 74.4
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 5.0e-131 471.5 304 74.3
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 5.0e-131 471.5 306 73.5
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 8.6e-131 470.7 308 73.7
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 3.3e-130 468.8 303 73.6
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 1.0e-128 463.8 302 73.5
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.4e-128 463.4 307 71.7
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 1.8e-128 463.0 309 71.8
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 2.3e-128 462.6 309 71.8
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 2.6e-127 459.1 310 71.3
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 1.3e-126 456.8 310 71.3
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 6.4e-126 454.5 304 72.4
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.1e-125 453.8 306 69.3
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.4e-125 452.6 309 70.6
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 2.4e-125 452.6 304 72.4
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 3.2e-125 452.2 309 70.6
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.2e-124 450.3 302 72.2
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 1.6e-124 449.9 304 69.7
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 2.0e-124 449.5 324 69.4
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 3.5e-124 448.7 304 70.4
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 3.5e-124 448.7 310 71.0
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 1.7e-123 446.4 304 69.7
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 5.0e-123 444.9 304 70.7
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 6.6e-123 444.5 279 76.3
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 6.6e-123 444.5 280 75.7
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 1.5e-122 443.4 303 71.3
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 2.5e-122 442.6 310 69.0
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 2.5e-122 442.6 302 69.5
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.3e-122 442.2 310 69.4
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 3.3e-122 442.2 309 68.6
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 5.6e-122 441.4 303 68.0
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 5.6e-122 441.4 304 69.4
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 5.6e-122 441.4 340 64.4
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 9.5e-122 440.7 307 68.4
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.1e-121 439.5 310 68.4
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 4.7e-121 438.3 302 68.9
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 6.2e-121 438.0 304 69.7
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 8.1e-121 437.6 344 63.7
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.1e-120 437.2 304 68.8
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.3e-120 436.0 315 68.3
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 2.3e-120 436.0 302 67.5
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 4.0e-120 435.3 309 68.6
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 6.8e-120 434.5 304 69.7
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.2e-119 433.7 310 67.4
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 4.4e-119 431.8 302 67.5
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 1.7e-118 429.9 307 68.1
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 2.2e-118 429.5 304 68.1
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.2e-118 429.5 302 67.5
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 1.1e-117 427.2 315 66.7
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.1e-117 427.2 302 67.9
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 1.4e-117 426.8 302 68.9
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 2.4e-117 426.0 310 67.1
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 2.4e-117 426.0 308 67.9
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 1.2e-116 423.7 304 67.1
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 1.2e-116 423.7 302 67.2
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 1.2e-116 423.7 302 68.5
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 1.6e-116 423.3 305 66.2
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 2.7e-116 422.5 302 67.9
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 3.0e-115 419.1 296 67.2
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 3.3e-114 415.6 304 64.1
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 5.6e-114 414.8 331 63.1
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 9.5e-114 414.1 302 65.2
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.8e-113 412.5 314 65.6
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.1e-112 410.6 331 63.7
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 1.8e-112 409.8 304 65.5
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 4.9e-110 401.7 280 70.4
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 1.9e-109 399.8 283 68.9
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.9e-109 399.8 280 70.7
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 3.5e-108 395.6 283 68.9
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 4.6e-108 395.2 350 59.4
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 9.6e-106 387.5 316 61.4
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 4.0e-104 382.1 222 82.0
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.0e-104 382.1 284 67.3
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 1.2e-103 380.6 367 53.7
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 4.3e-98 362.1 320 56.9
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 3.4e-95 352.4 300 59.7
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 6.4e-94 348.2 306 57.8
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 1.9e-93 346.7 300 57.0
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 4.6e-92 342.0 307 56.4
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 1.0e-91 340.9 300 57.0
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.7e-91 340.1 314 58.3
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 2.3e-91 339.7 280 62.1
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.2e-87 327.4 224 69.6
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 9.9e-87 324.3 277 57.0
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 3.8e-86 322.4 281 57.7
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 8.4e-86 321.2 224 67.4
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 3.9e-83 312.4 201 75.1
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.4e-80 303.1 315 50.5
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.4e-80 303.1 302 51.7
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.7e-70 270.4 213 62.4
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.9e-70 269.6 200 65.0
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 4.2e-69 265.8 192 68.2
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 4.2e-69 265.8 198 64.1
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 2.7e-68 263.1 199 62.8
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 9.7e-66 254.6 307 49.5
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 6.3e-65 251.9 168 72.0
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 3.2e-61 239.6 236 54.2
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 2.7e-60 236.5 137 84.7
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 9.1e-56 221.5 206 53.9
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 5.5e-53 212.2 169 64.5
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 3.3e-50 203.0 396 34.8
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 4.4e-50 202.6 153 61.4
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.1e-40 168.3 131 63.4
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 2.7e-39 166.8 299 35.8
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 2.6e-34 150.2 113 60.2
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 5.7e-34 149.1 305 33.1
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.7e-33 147.5 108 64.8
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.0e-30 138.3 275 32.7
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 2.0e-26 124.0 83 68.7
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 3.1e-24 116.7 87 58.6
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 5.4e-16 89.4 85 56.5
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 8.6e-14 82.0 179 33.0
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 1.5e-13 81.3 63 57.1
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 3.1e-11 73.6 53 60.4
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.2e-10 71.6 74 51.4
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.7e-09 67.8 79 46.8
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 4.9e-09 66.2 55 54.5
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 6.4e-09 65.9 36 88.9


User provided reference genes

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