Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 1.5e-170 602.8 313 100.0
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 1.1e-122 443.7 315 70.8
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 8.2e-121 437.6 322 73.6
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 1.9e-117 426.4 325 70.8
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 4.4e-114 415.2 308 64.3
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 3.1e-112 409.1 314 68.8
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 3.1e-112 409.1 314 68.8
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 1.2e-111 407.1 321 61.7
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 3.5e-111 405.6 333 59.8
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 4.5e-111 405.2 330 60.0
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 5.9e-111 404.8 323 60.1
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.3e-110 403.7 329 60.2
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 1.3e-110 403.7 309 62.8
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 3.8e-110 402.1 337 57.6
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 3.8e-110 402.1 320 59.1
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 1.1e-109 400.6 332 57.5
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 3.2e-109 399.1 325 59.4
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 4.2e-109 398.7 329 58.1
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.2e-108 397.1 314 66.2
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 8.0e-108 394.4 314 66.2
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 8.0e-108 394.4 332 58.7
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 1.8e-107 393.3 332 57.5
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 3.0e-107 392.5 332 58.4
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 4.0e-107 392.1 327 62.1
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 6.7e-107 391.3 332 57.5
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 8.8e-107 391.0 346 56.1
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 1.5e-106 390.2 328 58.5
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 2.0e-106 389.8 332 58.1
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 2.0e-106 389.8 316 62.0
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 2.6e-106 389.4 338 60.4
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 2.6e-106 389.4 334 57.5
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 3.3e-106 389.0 329 57.4
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.4e-106 388.7 310 65.5
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 4.4e-106 388.7 328 57.6
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 5.7e-106 388.3 318 57.5
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 7.5e-106 387.9 323 56.3
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 7.5e-106 387.9 329 55.9
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.3e-105 387.1 332 58.4
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 1.7e-105 386.7 332 56.3
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 4.8e-105 385.2 332 56.0
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 4.8e-105 385.2 322 58.1
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 6.3e-105 384.8 326 57.7
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 6.3e-105 384.8 330 58.2
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 8.2e-105 384.4 337 56.1
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 1.1e-104 384.0 330 57.0
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 1.4e-104 383.6 323 58.5
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 1.8e-104 383.3 332 57.2
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 1.8e-104 383.3 333 56.8
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 1.8e-104 383.3 325 64.6
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 3.1e-104 382.5 325 56.0
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 4.1e-104 382.1 316 59.8
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 7.0e-104 381.3 342 58.5
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 7.0e-104 381.3 328 57.3
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 1.6e-103 380.2 335 55.2
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 2.7e-103 379.4 314 57.3
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 4.5e-103 378.6 329 58.1
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 1.0e-102 377.5 338 55.3
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 1.3e-102 377.1 323 58.2
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 1.7e-102 376.7 333 55.6
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 2.9e-102 375.9 330 54.5
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 8.5e-102 374.4 330 54.5
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.1e-101 374.0 325 57.2
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 5.5e-101 371.7 329 56.8
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 7.2e-101 371.3 324 55.9
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 9.4e-101 370.9 328 54.6
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 1.2e-100 370.5 333 54.7
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 4.7e-100 368.6 311 58.5
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 4.7e-100 368.6 330 54.8
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 6.1e-100 368.2 321 54.8
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.4e-99 367.1 337 54.9
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 1.8e-99 366.7 331 55.3
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 4.0e-99 365.5 352 53.4
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 1.2e-98 364.0 329 55.3
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 1.5e-98 363.6 323 56.0
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 2.0e-98 363.2 329 54.7
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 2.6e-98 362.8 345 51.6
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 2.6e-98 362.8 322 56.5
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 5.7e-98 361.7 337 52.8
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 7.5e-98 361.3 341 52.8
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 1.3e-97 360.5 326 55.2
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 3.7e-97 359.0 352 52.8
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 6.3e-97 358.2 323 53.9
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 1.4e-96 357.1 338 53.3
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 1.4e-96 357.1 337 54.0
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 1.4e-96 357.1 337 53.4
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 1.8e-96 356.7 308 58.1
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 5.4e-96 355.1 342 54.1
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 9.1e-96 354.4 331 53.2
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 7.7e-95 351.3 338 50.9
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 1.2e-92 344.0 336 53.3
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 1.4e-91 340.5 283 65.4
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 1.2e-90 337.4 361 48.2
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 3.5e-87 325.9 318 50.3
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 2.9e-86 322.8 311 53.7
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 5.0e-86 322.0 386 49.5
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 5.0e-86 322.0 295 55.6
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 1.9e-85 320.1 320 50.6
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 1.2e-84 317.4 304 52.3
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 2.8e-84 316.2 402 47.8
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 2.8e-84 316.2 315 52.4
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 3.6e-84 315.8 426 47.9
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 1.4e-83 313.9 394 43.9
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 6.8e-83 311.6 402 48.3
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 2.2e-81 306.6 330 48.2
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 3.7e-81 305.8 411 42.1
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 1.1e-80 304.3 296 52.4
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 1.7e-78 297.0 322 46.9
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 5.0e-78 295.4 311 48.6
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 5.0e-78 295.4 310 47.4
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 2.5e-77 293.1 313 47.3
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 2.5e-77 293.1 351 44.2
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 2.0e-74 283.5 326 51.8
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 5.8e-74 282.0 271 53.1
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 7.5e-74 281.6 280 52.1
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 1.6e-71 273.9 311 46.0
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 1.7e-70 270.4 319 47.3
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 4.3e-69 265.8 319 47.0
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 4.3e-69 265.8 394 38.8
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 1.6e-68 263.8 371 38.8
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 1.8e-67 260.4 253 51.4
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 4.9e-65 252.3 154 71.4
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 1.6e-63 247.3 425 35.1
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 5.1e-62 242.3 324 39.8
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 3.6e-60 236.1 488 32.2
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 3.8e-57 226.1 315 39.0
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 4.6e-55 219.2 422 31.8
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 2.4e-43 180.3 413 29.5
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 1.6e-39 167.5 98 71.4
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 3.5e-39 166.4 224 45.1
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 4.5e-34 149.4 212 43.9
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 3.2e-32 143.3 166 46.4
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 1.9e-24 117.5 103 51.5
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 7.9e-23 112.1 167 40.1
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 1.5e-18 97.8 242 29.3
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 1.8e-11 74.3 67 49.3
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 3.4e-10 70.1 47 68.1
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 1.1e-08 65.1 62 48.4
PGR119G0593 Punica granatum HOM05D002394 ORTHO05D002508 5.5e-08 62.8 128 31.2
Migut.H00651 Erythranthe guttata HOM05D002394 ORTHO05D002508 6.1e-07 59.3 120 35.0
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 1.0e-06 58.5 132 30.3
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 1.8e-06 57.8 120 34.2
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 1.8e-06 57.8 120 34.2
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 1.8e-06 57.8 120 34.2
Solyc06g084320.1 Solanum lycopersicum HOM05D002394 ORTHO05D002508 1.8e-06 57.8 147 30.6
Sopen06g035710 Solanum pennellii HOM05D002394 ORTHO05D002508 1.8e-06 57.8 147 30.6
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 3.0e-06 57.0 120 33.3
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 5.1e-06 56.2 123 32.5
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 6.7e-06 55.8 121 35.5
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 6.7e-06 55.8 120 33.3


User provided reference genes

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