Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 5.0e-296 1020.4 529 100.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 5.5e-226 787.7 531 78.9
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 5.5e-226 787.7 531 78.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 5.1e-224 781.2 558 74.9
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 6.7e-224 780.8 558 75.3
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.3e-219 766.5 530 78.1
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 6.5e-219 764.2 530 77.7
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 3.1e-213 745.3 533 74.3
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 4.5e-212 741.5 530 74.7
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 7.7e-204 714.1 531 75.0
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 7.7e-204 714.1 533 70.4
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.7e-203 713.0 535 70.8
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 2.2e-203 712.6 533 70.2
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 2.2e-203 712.6 542 70.7
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.4e-202 709.9 545 70.5
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.9e-202 709.5 533 71.1
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 2.5e-202 709.1 535 70.7
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.8e-200 703.0 536 68.8
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 2.3e-200 702.6 542 70.5
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 6.7e-200 701.0 536 69.8
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 8.8e-200 700.7 532 71.1
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.1e-199 700.3 541 68.9
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 2.0e-199 699.5 532 70.9
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 3.3e-199 698.7 535 70.3
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 9.7e-199 697.2 538 69.1
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 2.2e-198 696.0 534 67.6
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 3.1e-197 692.2 531 70.2
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 7.0e-197 691.0 532 70.3
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.2e-196 690.3 534 70.0
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.6e-196 689.9 548 67.5
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-196 688.7 535 67.7
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.3e-195 686.8 534 67.8
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.2e-195 686.0 467 73.0
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.9e-195 685.6 532 67.7
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.0e-195 684.9 532 67.7
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.1e-194 683.7 472 74.4
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.5e-194 683.3 547 67.5
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.5e-194 683.3 535 68.6
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 3.2e-194 682.2 533 67.2
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 4.2e-194 681.8 462 74.5
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.5e-194 681.4 546 66.5
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 1.6e-193 679.9 536 67.4
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 4.7e-193 678.3 532 67.5
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.3e-192 676.0 541 65.6
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 6.7e-192 674.5 405 84.9
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 8.8e-192 674.1 531 67.0
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 4.4e-191 671.8 531 66.7
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 2.2e-190 669.5 465 74.0
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 2.8e-190 669.1 532 68.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 1.1e-189 667.2 437 78.9
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 5.3e-189 664.8 535 67.5
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.7e-188 662.5 532 65.8
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 4.5e-188 661.8 456 73.0
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 4.5e-188 661.8 437 77.3
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 5.9e-188 661.4 534 66.1
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.5e-186 656.0 597 59.6
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 4.2e-186 655.2 534 65.2
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 4.0e-184 648.7 534 62.9
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 6.8e-184 647.9 457 72.0
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.5e-183 646.7 453 70.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.5e-183 646.7 543 66.5
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 3.4e-183 645.6 456 72.4
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 6.3e-182 641.3 454 70.0
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.1e-181 640.6 536 63.8
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.4e-181 640.2 436 73.9
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 2.4e-181 639.4 456 70.6
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 2.0e-180 636.3 534 63.1
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 2.5e-178 629.4 533 62.1
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 5.5e-178 628.2 532 64.3
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 7.2e-178 627.9 528 66.5
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 7.2e-178 627.9 545 61.7
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 1.2e-177 627.1 534 62.2
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 1.2e-177 627.1 456 69.3
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 3.6e-177 625.5 537 61.3
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 8.0e-177 624.4 539 61.2
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 8.0e-177 624.4 539 61.2
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.4e-176 623.6 535 62.2
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.8e-176 623.2 538 61.3
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 8.9e-176 620.9 533 61.2
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 4.4e-175 618.6 535 61.7
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 4.4e-175 618.6 547 60.7
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 7.5e-175 617.8 456 67.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 9.8e-175 617.5 456 68.9
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 4.9e-174 615.1 408 77.0
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.1e-173 614.0 553 59.3
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 7.8e-172 607.8 461 67.0
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 2.3e-168 596.3 521 61.4
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.5e-167 593.6 414 70.5
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 2.9e-166 589.3 395 73.4
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 8.3e-166 587.8 811 46.0
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.2e-164 583.9 394 72.6
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.0e-163 580.9 455 65.1
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.9e-157 560.1 485 61.2
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.2e-156 557.4 474 62.2
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 2.7e-156 556.2 458 62.9
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 1.7e-155 553.5 501 59.5
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 3.0e-155 552.7 456 61.8
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 9.5e-154 547.7 437 65.2
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 6.4e-150 535.0 593 52.1
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 2.4e-149 533.1 562 54.3
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.2e-148 530.8 495 59.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 8.6e-147 524.6 416 68.3
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.2e-145 520.8 432 66.2
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 1.8e-144 516.9 564 53.4
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 4.4e-143 512.3 419 64.7
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.9e-142 509.6 458 60.5
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 3.4e-135 486.1 452 55.5
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 6.6e-131 471.9 454 55.5
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 5.3e-128 462.2 549 50.6
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 9.3e-125 451.4 439 53.5
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.8e-120 437.2 479 50.5
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 4.5e-119 432.6 468 49.1
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 1.3e-118 431.0 418 56.9
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 3.4e-111 406.4 569 44.6
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.8e-111 405.6 455 52.5
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 3.3e-98 363.2 286 71.3
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 5.7e-98 362.5 215 81.9
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.0e-91 341.7 438 45.0
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 9.1e-88 328.6 448 42.0
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 2.0e-87 327.4 299 56.2
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 2.6e-79 300.4 409 46.7
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 8.5e-78 295.4 368 47.6
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 4.7e-76 289.7 447 38.7
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 1.7e-62 244.6 236 59.3
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 1.2e-55 221.9 187 62.6
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 2.7e-55 220.7 159 65.4
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 6.8e-51 206.1 248 47.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.9e-49 200.7 159 70.4
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.1e-45 188.7 248 45.2
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.5e-45 187.6 245 44.9
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 2.1e-44 184.5 465 34.6
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.0e-38 165.6 116 67.2
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 4.3e-37 160.2 122 68.9
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-36 157.9 351 32.5
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 3.6e-36 157.1 126 65.9
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 8.9e-35 152.5 236 43.2
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-34 152.1 243 42.0
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.5e-34 151.8 243 42.4
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.8e-34 149.8 118 66.9
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 7.5e-34 149.4 97 74.2
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.9e-33 147.5 126 66.7
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.9e-33 147.5 99 76.8
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 2.4e-32 144.4 180 52.8
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.3e-30 138.7 141 59.6
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 5.1e-30 136.7 101 65.3
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 3.3e-29 134.0 116 56.9
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.2e-28 129.8 104 59.6
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.4e-27 128.6 96 65.6
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 2.1e-23 114.8 79 74.7
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 5.6e-21 106.7 61 85.2
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 5.6e-21 106.7 61 85.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 5.6e-21 106.7 222 37.4
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.1e-20 104.8 223 36.8
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.1e-19 102.4 231 34.6
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 1.2e-18 99.0 94 52.1
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.0e-18 98.2 90 61.1
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 5.4e-16 90.1 140 44.3
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 5.1e-14 83.6 144 34.0
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.1e-14 83.6 84 51.2
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 1.3e-12 79.0 121 43.0
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 1.4e-08 65.5 38 73.7
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 1.4e-08 65.5 38 73.7
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 1.4e-08 65.5 38 73.7
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 1.4e-08 65.5 38 73.7
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 5.4e-08 63.5 257 28.4
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 7.9e-07 59.7 37 81.1
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 7.9e-07 59.7 37 81.1
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 7.9e-07 59.7 37 81.1
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.3e-06 58.9 43 74.4


User provided reference genes

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