Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 9.9e-76 286.6 133 100.0
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.3e-70 269.6 137 92.0
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 3.2e-66 255.0 137 86.1
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 4.2e-66 254.6 137 86.9
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 4.2e-66 254.6 137 86.9
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 2.5e-63 245.4 137 83.9
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.3e-63 244.6 137 83.2
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.3e-62 243.0 137 82.5
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 2.2e-62 242.3 137 82.5
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 3.7e-62 241.5 137 82.5
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.1e-61 240.0 137 82.5
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.4e-61 239.6 135 82.2
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 2.4e-61 238.8 137 82.5
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 1.5e-60 236.1 139 80.6
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 2.0e-60 235.7 134 79.9
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 4.5e-60 234.6 134 79.1
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 7.7e-60 233.8 137 78.1
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.7e-59 232.6 137 78.1
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 1.7e-59 232.6 137 78.8
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.7e-59 232.6 137 76.6
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 2.9e-59 231.9 137 79.6
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 8.5e-59 230.3 136 77.9
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.1e-58 229.9 136 77.9
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.1e-58 229.9 136 77.9
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-58 229.9 137 76.6
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.4e-58 229.6 134 76.1
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 1.4e-58 229.6 137 77.4
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.4e-58 229.6 137 77.4
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.9e-58 229.2 137 78.1
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.9e-58 229.2 137 76.6
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 4.2e-58 228.0 129 79.1
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 5.5e-58 227.6 137 75.9
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 5.5e-58 227.6 137 77.4
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 9.4e-58 226.9 133 75.9
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.2e-57 226.5 137 75.2
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.2e-57 226.5 137 75.9
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.6e-57 226.1 134 76.9
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.7e-57 225.3 137 72.3
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 2.7e-57 225.3 137 75.2
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 3.6e-57 224.9 136 75.7
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 3.6e-57 224.9 137 74.5
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 4.6e-57 224.6 137 73.0
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 4.6e-57 224.6 137 72.3
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 6.1e-57 224.2 137 75.2
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 7.9e-57 223.8 137 73.7
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 1.0e-56 223.4 138 76.1
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.0e-56 223.4 137 73.7
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.8e-56 222.6 137 73.0
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.0e-56 221.9 134 73.1
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 3.0e-56 221.9 137 73.0
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 3.9e-56 221.5 137 73.7
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 3.9e-56 221.5 137 76.6
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.1e-56 221.1 134 73.1
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.1e-55 219.9 137 73.7
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.1e-55 219.9 137 71.5
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.5e-55 219.5 137 74.5
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 2.0e-55 219.2 137 74.5
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 2.0e-55 219.2 137 74.5
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.5e-55 218.8 137 73.7
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.5e-55 218.8 137 72.3
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 4.3e-55 218.0 134 73.1
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 5.7e-55 217.6 137 72.3
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 9.7e-55 216.9 137 73.0
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 1.3e-54 216.5 137 73.0
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 2.2e-54 215.7 134 75.4
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.4e-53 213.0 114 82.5
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 4.1e-53 211.5 130 71.5
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 4.1e-53 211.5 137 69.3
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 4.1e-53 211.5 114 81.6
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 6.9e-53 210.7 133 73.7
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 9.1e-53 210.3 124 74.2
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 1.5e-52 209.5 133 72.2
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 2.0e-52 209.1 133 72.2
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 2.0e-52 209.1 137 72.3
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.4e-52 208.4 133 72.2
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 5.9e-52 207.6 133 71.4
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 5.9e-52 207.6 133 71.4
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.0e-51 206.8 119 77.3
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.7e-51 206.1 133 70.7
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.7e-51 206.1 133 71.4
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 2.9e-51 205.3 133 72.2
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 2.9e-51 205.3 133 69.9
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 5.0e-51 204.5 115 76.5
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 5.0e-51 204.5 133 70.7
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 5.0e-51 204.5 133 69.9
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 5.0e-51 204.5 133 69.9
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 8.5e-51 203.8 134 68.7
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.4e-50 203.0 133 69.2
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.4e-50 203.0 133 69.9
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.9e-50 202.6 116 76.7
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 1.9e-50 202.6 137 70.1
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 4.2e-50 201.4 134 70.1
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 5.5e-50 201.1 115 76.5
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 7.2e-50 200.7 133 69.2
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 9.4e-50 200.3 114 81.6
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.6e-49 199.5 135 70.4
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 2.1e-49 199.1 134 64.9
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 2.7e-49 198.7 114 76.3
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.7e-49 198.7 115 73.9
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 4.7e-49 198.0 148 64.2
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 6.1e-49 197.6 126 68.3
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 7.9e-49 197.2 149 63.8
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 7.9e-49 197.2 115 73.0
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 7.9e-49 197.2 128 71.1
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 6.7e-48 194.1 133 64.7
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.1e-47 193.4 114 75.4
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 3.3e-47 191.8 111 75.7
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.3e-47 191.8 137 64.2
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 3.3e-47 191.8 134 67.2
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.4e-47 191.4 134 64.9
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.4e-47 191.4 134 64.9
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.4e-47 191.4 137 64.2
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 7.4e-47 190.7 149 61.1
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 2.8e-46 188.7 115 73.0
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 4.8e-46 188.0 115 73.9
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.3e-46 187.6 114 73.7
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 1.5e-44 183.0 135 63.7
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 1.5e-44 183.0 134 60.4
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 5.9e-44 181.0 134 59.7
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 5.0e-43 177.9 133 63.9
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 8.5e-43 177.2 167 52.7
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 8.5e-43 177.2 115 69.6
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 2.5e-42 175.6 129 61.2
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.2e-42 175.3 114 68.4
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 4.2e-42 174.9 101 81.2
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.3e-40 169.1 101 76.2
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.5e-39 166.4 96 79.2
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.6e-39 165.6 137 56.9
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 1.6e-36 156.4 105 66.7
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 7.7e-36 154.1 89 73.0
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.3e-35 153.3 86 77.9
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.3e-35 153.3 133 58.6
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 1.5e-34 149.8 127 60.6
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.5e-34 149.1 82 79.3
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.5e-34 149.1 82 79.3
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.5e-34 149.1 82 79.3
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 4.2e-34 148.3 90 76.7
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 9.4e-34 147.1 81 79.0
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 2.1e-33 146.0 101 72.3
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 1.5e-31 139.8 81 76.5
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.4e-29 133.3 79 72.2
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.8e-29 132.9 72 88.9
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.4e-29 132.5 82 72.0
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 5.3e-29 131.3 143 43.4
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 1.6e-28 129.8 136 46.3
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 5.5e-26 121.3 61 85.2
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 9.8e-23 110.5 133 38.3
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 1.2e-17 93.6 53 77.4
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 2.2e-14 82.8 141 36.9
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 1.8e-13 79.7 134 38.1
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 4.5e-12 75.1 117 39.3
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.0e-11 73.9 45 68.9
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.7e-11 73.2 36 83.3
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.0e-11 71.6 60 58.3
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 1.1e-10 70.5 48 66.7


User provided reference genes

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