Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 4.1e-142 508.1 260 100.0
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 6.6e-124 447.6 260 87.7
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 2.5e-123 445.7 249 88.4
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 3.6e-122 441.8 258 83.7
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 3.1e-121 438.7 259 84.6
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 1.5e-120 436.4 257 83.7
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 2.9e-119 432.2 259 81.5
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 6.4e-119 431.0 260 83.8
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 9.2e-118 427.2 244 88.1
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 7.8e-117 424.1 262 81.3
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 6.6e-116 421.0 248 85.1
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 6.6e-116 421.0 248 85.1
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 1.3e-111 406.8 255 80.0
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 2.2e-111 406.0 267 75.3
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.4e-110 403.3 249 79.9
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 9.2e-110 400.6 263 77.9
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 6.0e-109 397.9 256 78.1
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 6.0e-109 397.9 255 77.3
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.0e-108 397.1 263 76.8
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.3e-108 396.7 262 76.7
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 2.3e-108 396.0 254 77.2
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 8.6e-108 394.0 256 75.4
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.1e-107 393.7 265 75.1
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 1.9e-107 392.9 255 75.7
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 1.9e-107 392.9 245 80.4
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 2.5e-107 392.5 244 79.1
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 3.3e-107 392.1 254 76.0
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 5.6e-107 391.3 259 74.1
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 5.6e-107 391.3 255 75.7
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 7.3e-107 391.0 265 74.7
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 9.6e-107 390.6 266 72.6
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 2.1e-106 389.4 254 76.8
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 2.8e-106 389.0 244 79.5
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 3.6e-106 388.7 255 75.7
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 3.6e-106 388.7 256 75.8
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 3.6e-106 388.7 255 76.9
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 4.7e-106 388.3 265 73.2
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 4.7e-106 388.3 265 74.0
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 8.1e-106 387.5 265 72.5
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 1.4e-105 386.7 245 77.6
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 1.4e-105 386.7 254 76.0
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 2.4e-105 386.0 265 72.1
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 3.1e-105 385.6 265 72.5
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 8.9e-105 384.0 265 72.8
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 1.2e-104 383.6 243 78.6
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 1.2e-104 383.6 255 74.5
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 1.5e-104 383.3 239 78.2
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 2.6e-104 382.5 292 68.2
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 4.4e-104 381.7 265 71.3
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 7.6e-104 380.9 247 75.7
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 9.9e-104 380.6 255 74.9
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 1.3e-103 380.2 256 73.4
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 3.8e-103 378.6 254 74.0
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 6.4e-103 377.9 261 72.4
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 1.1e-102 377.1 250 74.8
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.1e-102 377.1 260 69.6
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.1e-102 377.1 263 73.0
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.1e-102 377.1 261 70.5
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 2.4e-102 375.9 248 74.2
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 4.2e-102 375.2 247 74.1
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 5.4e-102 374.8 282 70.6
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 9.3e-102 374.0 229 78.6
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 2.7e-101 372.5 256 71.1
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 4.6e-101 371.7 256 70.7
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 6.0e-101 371.3 267 71.9
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.7e-100 369.8 269 71.4
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 1.7e-100 369.8 231 79.2
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 1.7e-100 369.8 232 79.3
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 3.0e-100 369.0 256 71.1
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 3.9e-100 368.6 250 72.8
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 5.1e-100 368.2 228 79.8
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.5e-99 365.9 269 69.9
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 3.3e-99 365.5 265 69.8
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 3.3e-99 365.5 244 73.0
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 7.3e-99 364.4 246 72.8
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 1.3e-98 363.6 257 69.3
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.1e-97 360.5 256 68.4
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 1.4e-97 360.1 246 69.9
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 3.1e-97 359.0 266 66.2
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 4.0e-97 358.6 274 67.5
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 1.5e-96 356.7 347 56.8
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 4.5e-96 355.1 267 67.8
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.3e-95 353.6 249 67.9
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 1.7e-95 353.2 267 67.4
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 2.2e-95 352.8 246 70.3
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 2.2e-95 352.8 246 69.5
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 3.8e-95 352.1 253 67.6
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 3.8e-95 352.1 234 73.9
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 3.8e-95 352.1 256 66.4
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 8.4e-95 350.9 249 67.5
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 1.1e-94 350.5 256 70.3
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 1.1e-94 350.5 234 73.1
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 2.4e-94 349.4 254 71.3
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 3.2e-94 349.0 246 69.1
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 7.1e-94 347.8 287 62.0
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.2e-93 347.1 252 69.0
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 1.2e-93 347.1 244 68.9
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 6.0e-93 344.7 253 65.6
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 6.0e-93 344.7 265 69.1
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.0e-92 344.0 246 68.3
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 2.3e-92 342.8 267 64.0
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 3.0e-92 342.4 246 67.1
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 6.7e-92 341.3 214 76.2
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 8.7e-92 340.9 246 67.9
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.1e-91 340.5 246 68.7
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 1.1e-91 340.5 246 67.5
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 1.1e-91 340.5 323 59.1
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.9e-91 339.7 246 67.5
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 1.9e-91 339.7 246 67.5
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 1.9e-91 339.7 259 64.9
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 7.4e-91 337.8 246 67.1
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 1.3e-90 337.0 248 64.9
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 2.1e-90 336.3 246 67.1
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 2.8e-90 335.9 246 66.7
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 3.7e-90 335.5 213 76.1
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 1.2e-88 330.5 227 72.7
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 3.4e-88 328.9 246 66.7
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 4.5e-88 328.6 213 73.7
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 5.8e-88 328.2 248 65.3
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.2e-87 326.2 213 73.2
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 8.4e-87 324.3 212 73.6
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 9.3e-86 320.9 260 65.4
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 1.6e-85 320.1 257 60.7
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 2.1e-85 319.7 258 64.7
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 2.3e-84 316.2 253 62.8
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 2.5e-83 312.8 264 61.7
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 2.1e-82 309.7 274 60.6
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 1.1e-81 307.4 242 61.6
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 4.0e-81 305.4 263 61.2
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.5e-79 298.1 305 54.1
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.9e-78 296.6 204 70.6
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.2e-78 295.4 206 70.9
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 7.1e-78 294.7 255 60.0
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.6e-77 293.5 245 59.6
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.5e-77 292.4 197 74.1
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 4.3e-75 285.4 184 78.3
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 7.4e-75 284.6 243 59.3
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.8e-73 280.0 196 75.0
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.5e-72 276.9 243 56.8
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.5e-70 269.6 234 58.5
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 3.9e-68 262.3 252 53.6
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 8.7e-68 261.2 259 51.4
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.5e-67 260.4 192 64.1
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 1.1e-65 254.2 180 67.8
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 6.9e-65 251.5 262 55.0
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 7.2e-62 241.5 151 76.8
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 1.6e-61 240.4 245 49.4
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.8e-57 226.9 207 61.4
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 5.3e-57 225.3 147 77.6
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.5e-54 215.3 194 60.8
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 1.2e-53 214.2 244 46.3
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 2.3e-52 209.9 234 46.2
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.1e-45 186.8 166 61.4
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.5e-43 180.6 104 78.8
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 3.7e-42 176.0 122 74.6
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 1.2e-35 154.5 105 75.2
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.1e-33 147.9 95 80.0
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.2e-32 144.4 148 54.7
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 7.2e-30 135.2 238 37.4
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 5.2e-28 129.0 118 59.3
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 5.2e-28 129.0 118 59.3
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 2.6e-27 126.7 97 70.1
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 3.4e-27 126.3 160 46.2
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.6e-24 117.5 82 73.2
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 4.5e-24 115.9 66 81.8
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.5e-22 110.9 66 74.2
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.4e-20 104.4 163 41.7
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 9.2e-17 91.7 68 66.2
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.5e-16 89.7 64 71.9
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 3.3e-14 83.2 84 54.8
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 8.0e-13 78.6 100 45.0
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 5.4e-09 65.9 47 55.3
Ca_29445_v3 Cicer arietinum L. HOM05D004157 ORTHO05D148328 1.0e-07 61.6 207 26.6
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.1e-06 58.2 123 37.4
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 1.9e-06 57.4 35 80.0
Medtr1g094635 Medicago truncatula HOM05D004157 ORTHO05D004860 5.6e-06 55.8 40 62.5


User provided reference genes

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