Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011101 Lotus japonicus HOM05D008081 ORTHO05D010223 2.5e-242 841.6 408 100.0
Medtr2g055250 Medicago truncatula HOM05D008081 ORTHO05D010223 5.2e-192 674.5 407 82.1
Ca_02616_v3 Cicer arietinum L. HOM05D008081 ORTHO05D010223 8.9e-192 673.7 409 82.4
Psat1g025520 Pisum sativum HOM05D008081 ORTHO05D010223 9.2e-189 663.7 406 80.0
Phvul.009G199400 Phaseolus vulgaris HOM05D008081 ORTHO05D010223 6.2e-185 651.0 411 79.8
VMungo1309G1591 Vigna mungo HOM05D008081 ORTHO05D010223 1.3e-182 643.3 415 78.6
Glyma.04G150400 Glycine max HOM05D008081 ORTHO05D010223 3.0e-179 632.1 413 78.0
Glyma.06G213000 Glycine max HOM05D008081 ORTHO05D010223 1.2e-177 626.7 414 76.3
Lalb_Chr01g0020971 Lupinus albus HOM05D008081 ORTHO05D010223 3.3e-162 575.5 409 69.9
QL02p086958 Quercus lobata HOM05D008081 ORTHO05D010223 2.6e-127 459.5 408 58.3
Manes.14G127800 Manihot esculenta HOM05D008081 ORTHO05D010223 8.5e-126 454.5 412 57.8
CANSAT56G1336 Cannabis sativa HOM05D008081 ORTHO05D010223 3.6e-124 449.1 410 54.6
Cc06_g09100 Coffea canephora HOM05D008081 ORTHO05D010223 1.7e-121 440.3 408 54.7
COL.COLO4_34977 Corchorus olitorius HOM05D008081 ORTHO05D010223 1.8e-120 436.8 405 55.1
Hma1.2p1_0018F.1_g012950 Hydrangea macrophylla HOM05D008081 ORTHO05D010223 4.1e-120 435.6 404 54.7
DCAR_009223 Daucus carota HOM05D008081 ORTHO05D010223 6.5e-118 428.3 413 55.9
Thecc.09G118700 Theobroma cacao HOM05D008081 ORTHO05D010223 8.5e-118 427.9 409 53.3
Duzib168G0460 Durio zibethinus HOM05D008081 ORTHO05D010223 5.5e-117 425.2 408 52.2
Nn2g11886 Nelumbo nucifera HOM05D008081 ORTHO05D010223 9.4e-117 424.5 408 55.9
Eucgr.L02382 Eucalyptus grandis HOM05D008081 ORTHO05D010223 5.1e-115 418.7 413 52.8
TWI34G1060 Tripterygium wilfordii HOM05D008081 ORTHO05D010223 2.0e-114 416.8 411 53.5
Gohir.D06G057200 Gossypium hirsutum HOM05D008081 ORTHO05D010223 9.7e-114 414.5 407 52.8
Nitab4.5_0000282g0020 Nicotiana tabacum HOM05D008081 ORTHO05D010223 9.7e-114 414.5 407 53.3
PGR142G1327 Punica granatum HOM05D008081 ORTHO05D010223 2.8e-113 412.9 413 53.0
Gohir.A06G059000 Gossypium hirsutum HOM05D008081 ORTHO05D010223 4.8e-113 412.1 407 52.8
ECA234G2703 Erigeron canadensis HOM05D008081 ORTHO05D010223 1.1e-112 411.0 413 52.1
Gorai.010G066900 Gossypium raimondii HOM05D008081 ORTHO05D010223 1.1e-112 411.0 407 52.6
Atru.chr7.1264 Acer truncatum HOM05D008081 ORTHO05D010223 1.4e-112 410.6 415 52.0
MBI04_g33811_MAGBIO Magnolia biondii HOM05D008081 ORTHO05D010223 4.5e-111 405.6 409 53.1
Ciclev10008639m.g Citrus clementina HOM05D008081 ORTHO05D010223 1.0e-110 404.4 413 52.5
Aqoxy7G01970 Aquilegia oxysepala HOM05D008081 ORTHO05D010223 2.9e-110 402.9 405 53.6
HanXRQChr10g0316871 Helianthus annuus HOM05D008081 ORTHO05D010223 5.0e-110 402.1 416 53.4
Potri.018G071900 Populus trichocarpa HOM05D008081 ORTHO05D010223 2.1e-108 396.7 412 51.7
Lsat_1_v5_gn_5_98420 Lactuca sativa HOM05D008081 ORTHO05D010223 5.2e-107 392.1 412 50.7
Sabra18G0062600 Salix brachista HOM05D008081 ORTHO05D010223 2.0e-106 390.2 410 51.7
TAR383G0366 Trochodendron aralioides HOM05D008081 ORTHO05D010223 5.3e-104 382.1 398 51.3
GSVIVG01015465001 Vitis vinifera HOM05D008081 ORTHO05D010223 9.1e-104 381.3 410 50.2
Cpa.g.sc75.87 Carica papaya HOM05D008081 ORTHO05D010223 3.5e-103 379.4 376 54.8
Sopen08g011800 Solanum pennellii HOM05D008081 ORTHO05D010223 6.5e-102 375.2 402 48.3
Solyc08g041700.1 Solanum lycopersicum HOM05D008081 ORTHO05D010223 1.9e-101 373.6 402 48.0
PSO765G0202 Papaver somniferum HOM05D008081 ORTHO05D010223 3.6e-100 369.4 407 49.6
PGSC0003DMG400015624 Solanum tuberosum HOM05D008081 ORTHO05D010223 1.2e-98 364.4 400 48.2
PSO349G0241 Papaver somniferum HOM05D008081 ORTHO05D010223 2.8e-97 359.8 409 49.4
Nitab4.5_0003085g0020 Nicotiana tabacum HOM05D008081 ORTHO05D010223 1.1e-96 357.8 372 51.6
Thhalv10013658m.g Eutrema salsugineum HOM05D008081 ORTHO05D010223 4.5e-95 352.4 401 46.6
Carub.0006s1834 Capsella rubella HOM05D008081 ORTHO05D010223 8.5e-94 348.2 401 45.9
AT5G19970 Arabidopsis thaliana HOM05D008081 ORTHO05D010223 1.5e-93 347.4 401 47.6
CSS0001106 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 1.5e-93 347.4 331 54.1
BolC2t06998H Brassica oleracea HOM05D008081 ORTHO05D010223 7.2e-93 345.1 403 48.1
Actinidia09389 Actinidia chinensis HOM05D008081 ORTHO05D010223 9.4e-93 344.7 409 47.7
BNapus_Darmor_BZH_scaffold_38p01920 Brassica napus HOM05D008081 ORTHO05D010223 9.4e-93 344.7 403 48.1
CSS0008637 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 2.1e-92 343.6 331 54.1
A02p05940 Brassica napus HOM05D008081 ORTHO05D010223 2.7e-92 343.2 403 47.6
BraA02t05546Z Brassica rapa HOM05D008081 ORTHO05D010223 2.7e-92 343.2 403 47.6
Sp6g24410 Schrenkiella parvula HOM05D008081 ORTHO05D010223 4.7e-92 342.4 402 46.8
Oeu032197.1 Olea europaea HOM05D008081 ORTHO05D010223 6.1e-92 342.0 408 44.9
Dinv36582 Davidia involucrata HOM05D008081 ORTHO05D010223 3.8e-86 322.8 327 55.0
CSS0031360 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 5.0e-86 322.4 333 52.0
Eucgr.C01103 Eucalyptus grandis HOM05D008081 ORTHO05D010223 2.5e-85 320.1 334 51.2
CARHR192880 Cardamine hirsuta HOM05D008081 ORTHO05D010223 9.5e-85 318.2 373 45.3
AL6G31500 Arabidopsis lyrata HOM05D008081 ORTHO05D010223 8.0e-84 315.1 372 45.4
Thhalv10013905m.g Eutrema salsugineum HOM05D008081 ORTHO05D010223 1.4e-83 314.3 372 44.6
TPR.G30892 Trifolium pratense HOM05D008081 ORTHO05D010223 4.0e-83 312.8 213 73.2
Peaxi162Scf00292g00051 Petunia axillaris HOM05D008081 ORTHO05D010223 2.8e-81 306.6 310 51.0
Aa31LG4G11630 Aethionema arabicum HOM05D008081 ORTHO05D010223 4.9e-81 305.8 357 45.9
Os01g0647000 Oryza sativa ssp. japonica HOM05D008081 ORTHO05D010223 2.0e-79 300.4 407 43.0
Zm00001eb158500 Zea mays HOM05D008081 ORTHO05D010223 4.3e-77 292.7 422 42.7
THA.LOC104815107 Tarenaya hassleriana HOM05D008081 ORTHO05D010223 1.8e-75 287.3 412 39.6
ATR0083G076 Amborella trichopoda HOM05D008081 ORTHO05D010223 1.5e-66 257.7 397 39.3
CSS0020794 Camellia sinensis var. sinensis HOM05D008081 ORTHO05D010223 2.6e-66 256.9 400 41.0
BcaB05g22890 Brassica carinata HOM05D008081 ORTHO05D010223 2.3e-46 190.7 248 43.1
BcaC03g13723 Brassica carinata HOM05D008081 ORTHO05D010223 6.9e-27 125.9 139 43.9
Lalb_Chr04g0261791 Lupinus albus HOM05D003005 ORTHO05D004170 7.9e-07 59.3 341 25.2
Pp3c8_10900 Physcomitrium patens HOM05D004302 ORTHO05D004939 7.9e-07 59.3 398 21.4


User provided reference genes

Program Settings