Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 1.3e-137 493.0 243 100.0
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 5.4e-104 381.3 240 79.2
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 1.1e-101 373.6 241 80.1
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 3.3e-101 372.1 242 78.1
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 4.3e-101 371.7 239 79.1
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 2.0e-98 362.8 240 77.1
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 7.6e-98 360.9 234 76.5
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 1.3e-94 350.1 239 75.7
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 1.7e-94 349.7 239 75.7
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 3.5e-87 325.5 240 70.4
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 4.6e-87 325.1 241 69.7
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 6.7e-86 321.2 240 69.6
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 3.3e-85 318.9 240 67.5
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 4.3e-85 318.5 235 70.2
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 5.6e-85 318.2 237 70.5
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 7.4e-85 317.8 240 68.3
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 9.6e-85 317.4 240 68.8
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 9.6e-85 317.4 244 66.8
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 1.3e-84 317.0 243 68.3
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 2.1e-84 316.2 240 68.8
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 2.8e-84 315.8 234 70.5
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 4.8e-84 315.1 242 67.4
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 6.2e-84 314.7 244 66.4
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 4.0e-83 312.0 233 69.1
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 6.9e-83 311.2 240 66.7
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 9.0e-83 310.8 244 66.8
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 1.2e-82 310.5 233 68.2
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 1.2e-82 310.5 233 68.7
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 1.5e-82 310.1 234 67.1
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 3.4e-82 308.9 241 66.8
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 4.5e-82 308.5 246 65.4
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 4.5e-82 308.5 232 69.4
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 3.8e-81 305.4 246 65.4
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 4.9e-81 305.1 242 66.9
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 3.2e-80 302.4 236 66.9
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 4.2e-80 302.0 241 65.1
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 4.2e-80 302.0 234 67.5
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 5.5e-80 301.6 242 64.5
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 5.5e-80 301.6 243 64.6
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 7.1e-80 301.2 240 65.4
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 9.3e-80 300.8 239 65.7
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 9.3e-80 300.8 243 64.6
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 9.3e-80 300.8 243 66.3
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 1.2e-79 300.4 242 64.0
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 3.5e-79 298.9 268 61.6
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 4.6e-79 298.5 241 65.6
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 4.6e-79 298.5 271 60.5
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 7.9e-79 297.7 243 63.8
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 1.8e-78 296.6 240 64.2
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 2.3e-78 296.2 242 64.0
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 3.0e-78 295.8 240 64.6
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 3.0e-78 295.8 234 65.4
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 3.9e-78 295.4 242 64.0
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 3.9e-78 295.4 232 66.8
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 8.7e-78 294.3 240 63.8
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 1.1e-77 293.9 238 63.9
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 1.1e-77 293.9 243 62.6
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 1.1e-77 293.9 243 63.4
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 1.5e-77 293.5 241 64.7
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.5e-77 292.7 268 60.4
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 3.3e-77 292.4 240 65.0
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 3.3e-77 292.4 241 63.9
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 3.3e-77 292.4 241 63.9
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 3.3e-77 292.4 243 64.2
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 3.3e-77 292.4 267 60.7
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 4.3e-77 292.0 240 64.2
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 4.3e-77 292.0 240 64.2
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 7.4e-77 291.2 267 60.7
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 9.6e-77 290.8 248 63.7
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 1.3e-76 290.4 274 59.1
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 1.6e-76 290.0 243 62.1
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 3.7e-76 288.9 232 65.1
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 4.8e-76 288.5 240 62.9
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 4.8e-76 288.5 178 80.9
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 1.1e-75 287.3 246 64.2
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 3.1e-75 285.8 247 63.6
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 6.9e-75 284.6 245 60.4
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 9.0e-75 284.3 239 61.9
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 2.0e-74 283.1 245 60.0
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 2.6e-74 282.7 234 62.4
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 4.5e-74 282.0 238 63.0
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 7.6e-74 281.2 179 77.1
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 7.6e-74 281.2 231 66.7
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 4.9e-73 278.5 243 61.3
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 1.9e-72 276.6 238 62.6
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 9.3e-72 274.2 220 64.1
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 1.3e-70 270.4 269 56.1
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 1.3e-70 270.4 256 57.8
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 3.9e-70 268.9 239 58.2
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 5.1e-70 268.5 236 60.2
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 6.3e-68 261.5 263 54.4
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 1.2e-66 257.3 253 56.9
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 7.7e-66 254.6 231 56.7
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 1.4e-64 250.4 271 51.7
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 2.5e-64 249.6 243 57.6
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 4.2e-64 248.8 276 51.1
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 3.3e-61 239.2 241 59.8
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 2.8e-60 236.1 221 57.9
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 7.7e-58 228.0 242 54.1
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 1.1e-56 224.2 233 54.9
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 3.8e-49 199.1 261 45.6
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 2.1e-47 193.4 227 51.1
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 1.1e-45 187.6 256 46.1
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 1.2e-42 177.6 130 70.0
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 2.7e-39 166.4 180 48.3
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 3.0e-38 162.9 258 43.4
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 4.1e-35 152.5 121 65.3
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 1.3e-28 131.0 107 68.2
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 1.1e-27 127.9 120 55.0
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 7.0e-27 125.2 144 52.1
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 1.3e-25 120.9 118 58.5
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 3.5e-18 96.3 161 36.0
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 3.9e-17 92.8 111 49.5
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 5.6e-08 62.4 38 78.9
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 8.0e-07 58.5 48 58.3
Pp3c4_16200 Physcomitrium patens HOM05D006878 ORTHO05D008579 1.1e-06 58.2 137 35.0


User provided reference genes

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