Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 2.4e-160 568.9 313 100.0
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 7.0e-120 434.5 327 70.3
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 4.5e-119 431.8 328 70.4
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 3.2e-117 425.6 341 68.9
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 6.7e-115 417.9 327 69.1
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 6.7e-107 391.3 309 69.3
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 2.0e-106 389.8 318 66.4
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 1.2e-103 380.6 338 62.7
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 1.6e-103 380.2 338 62.4
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 8.9e-91 337.8 336 57.1
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 9.8e-90 334.3 335 57.6
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 1.3e-89 334.0 331 58.0
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 7.0e-88 328.2 330 57.9
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 2.0e-87 326.6 333 57.4
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 4.5e-87 325.5 339 54.9
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 4.5e-87 325.5 339 56.3
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 1.0e-86 324.3 320 57.2
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 8.6e-86 321.2 344 56.1
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 1.1e-85 320.9 324 56.2
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 7.3e-85 318.2 330 57.0
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 3.6e-84 315.8 339 54.0
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 4.7e-84 315.5 327 54.4
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 4.7e-84 315.5 320 57.2
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 6.1e-84 315.1 340 53.5
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 3.1e-83 312.8 332 55.1
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 5.2e-83 312.0 316 57.6
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 6.8e-83 311.6 337 54.6
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.5e-82 310.5 332 54.2
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 7.5e-82 308.1 330 53.9
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 1.3e-81 307.4 327 52.9
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 1.7e-81 307.0 340 55.6
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 3.7e-81 305.8 334 53.9
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 4.9e-81 305.4 338 54.1
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 6.4e-81 305.1 321 56.1
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 8.3e-81 304.7 320 55.6
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 1.9e-80 303.5 322 56.2
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 5.4e-80 302.0 321 55.8
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 1.6e-79 300.4 321 55.5
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 3.5e-79 299.3 329 54.1
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 4.6e-79 298.9 331 54.4
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.3e-78 296.6 314 55.4
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 2.3e-78 296.6 314 55.4
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 1.5e-77 293.9 331 58.3
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 3.3e-77 292.7 320 54.4
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 5.6e-77 292.0 349 52.1
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 2.1e-76 290.0 340 50.9
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 5.2e-75 285.4 331 51.7
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 1.5e-74 283.9 343 49.6
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 2.6e-74 283.1 330 51.2
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 3.4e-74 282.7 331 51.1
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 1.3e-73 280.8 330 50.3
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 2.9e-73 279.6 315 52.4
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 3.2e-72 276.2 326 50.6
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 4.1e-72 275.8 314 53.8
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-71 273.1 304 54.3
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 3.5e-71 272.7 326 50.6
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 1.7e-70 270.4 331 55.0
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 1.7e-70 270.4 327 49.8
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 2.3e-70 270.0 334 55.1
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 4.3e-69 265.8 325 49.8
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.3e-69 265.8 315 48.3
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 5.6e-69 265.4 324 47.8
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 5.6e-69 265.4 312 51.0
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 9.5e-69 264.6 311 49.5
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 2.1e-68 263.5 328 48.5
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 2.1e-68 263.5 317 49.2
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 2.8e-68 263.1 311 49.5
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 2.8e-68 263.1 332 48.8
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 4.7e-68 262.3 320 48.1
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 6.2e-68 261.9 330 48.8
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 6.2e-68 261.9 310 50.3
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 4.0e-67 259.2 311 50.8
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 6.8e-67 258.5 314 48.7
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 6.8e-67 258.5 321 48.6
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 8.9e-67 258.1 311 51.4
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 1.1e-64 251.1 313 51.4
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 3.2e-64 249.6 349 45.6
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 3.2e-64 249.6 376 48.4
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 3.2e-64 249.6 341 47.2
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 5.4e-64 248.8 293 48.1
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 5.4e-64 248.8 141 80.1
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 1.3e-62 244.2 334 45.5
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 3.9e-62 242.7 132 83.3
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 1.5e-61 240.7 306 48.7
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 3.6e-60 236.1 327 45.9
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 6.8e-59 231.9 130 84.6
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 6.0e-55 218.8 304 44.7
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 1.1e-53 214.5 356 41.3
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 5.6e-53 212.2 244 52.5
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 2.1e-52 210.3 296 44.3
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 4.7e-52 209.1 279 47.3
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 3.1e-51 206.5 109 82.6
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 2.9e-49 199.9 287 41.8
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 1.1e-48 198.0 109 82.6
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 1.2e-47 194.5 109 80.7
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 3.3e-45 186.4 137 65.0
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 1.4e-43 181.0 98 81.6
AagrBONN_evm.TU.Sc2ySwM_362.1793 Anthoceros agrestis HOM05D006626 ORTHO05D007352 5.8e-42 175.6 137 59.1
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 1.3e-41 174.5 125 68.8
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 2.4e-40 170.2 98 79.6
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 4.2e-40 169.5 92 84.8
CBR_g84850 Chara braunii HOM05D006626 ORTHO05D007352 6.7e-38 162.2 145 56.6
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 4.8e-36 156.0 244 46.7
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 3.4e-34 149.8 103 71.8
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 1.0e-33 148.3 98 70.4
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 1.4e-32 144.4 98 69.4
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 7.1e-32 142.1 265 40.4
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 4.0e-27 126.3 253 38.7
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 6.9e-19 99.0 219 35.2
arahy.Tifrunner.gnm1.ann1.MM579M Arachis hypogaea HOM05D001890 ORTHO05D003442 1.3e-17 94.7 141 47.5
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea HOM05D003961 ORTHO05D007352 2.2e-17 94.0 145 44.1
Nitab4.5_0027058g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 3.0e-14 83.6 226 36.3
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 7.4e-13 79.0 61 63.9
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 7.4e-13 79.0 61 63.9
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 7.4e-13 79.0 61 63.9
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 1.3e-12 78.2 54 66.7
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 5.3e-11 72.8 42 73.8
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 9.1e-11 72.0 41 75.6
Aa31sc161G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 3.8e-09 66.6 217 31.3
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 5.0e-09 66.2 44 63.6
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 9.4e-08 62.0 202 29.7
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 1.2e-07 61.6 202 30.7
CDE02G2228 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 1.6e-07 61.2 140 35.7
VMungo1309G0027 Vigna mungo HOM05D006626 ORTHO05D007352 1.4e-06 58.2 117 40.2


User provided reference genes

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