Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.2e-34 149.4 81 100.0
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 2.2e-17 92.0 69 81.2
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.3e-17 90.1 68 73.5
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.3e-17 90.1 68 73.5
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.4e-16 89.4 68 72.1
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 3.2e-16 88.2 63 85.7
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 5.4e-16 87.4 64 76.6
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 9.2e-16 86.7 68 72.1
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.2e-15 86.3 64 78.1
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.6e-15 85.9 64 78.1
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 1.6e-15 85.9 63 85.7
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.6e-15 85.9 68 73.5
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.0e-15 85.5 68 73.5
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.0e-15 85.5 64 78.1
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 2.7e-15 85.1 64 76.6
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-15 85.1 64 76.6
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.7e-15 85.1 64 76.6
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 3.5e-15 84.7 64 75.0
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 3.5e-15 84.7 68 72.1
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.6e-15 84.3 63 74.6
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 4.6e-15 84.3 68 70.6
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 6.0e-15 84.0 64 76.6
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 6.0e-15 84.0 65 72.3
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 6.0e-15 84.0 68 72.1
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 7.8e-15 83.6 64 78.1
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 7.8e-15 83.6 64 75.0
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 7.8e-15 83.6 64 75.0
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 7.8e-15 83.6 64 76.6
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 7.8e-15 83.6 64 76.6
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 1.0e-14 83.2 57 78.9
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.0e-14 83.2 68 69.1
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 1.0e-14 83.2 68 70.6
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.0e-14 83.2 70 71.4
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.3e-14 82.8 68 69.1
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.3e-14 82.8 68 70.6
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.3e-14 82.8 64 73.4
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.3e-14 82.8 68 67.6
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.7e-14 82.4 64 73.4
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.7e-14 82.4 58 86.2
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.7e-14 82.4 64 75.0
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.7e-14 82.4 68 69.1
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 2.3e-14 82.0 67 68.7
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 2.3e-14 82.0 68 70.6
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 2.3e-14 82.0 68 70.6
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.3e-14 82.0 64 75.0
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.0e-14 81.6 64 75.0
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.0e-14 81.6 64 76.6
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.0e-14 81.6 64 71.9
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 3.9e-14 81.3 68 67.6
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.9e-14 81.3 64 75.0
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 5.0e-14 80.9 68 67.6
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 6.6e-14 80.5 68 69.1
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 6.6e-14 80.5 64 75.0
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 6.6e-14 80.5 62 79.0
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 6.6e-14 80.5 68 66.2
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 6.6e-14 80.5 64 75.0
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 8.6e-14 80.1 65 72.3
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 8.6e-14 80.1 65 72.3
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.1e-13 79.7 60 80.0
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.1e-13 79.7 63 74.6
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.1e-13 79.7 68 66.2
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.1e-13 79.7 64 71.9
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.5e-13 79.3 60 75.0
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.5e-13 79.3 68 67.6
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.5e-13 79.3 68 69.1
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.5e-13 79.3 68 67.6
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.9e-13 79.0 64 70.3
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.5e-13 78.6 64 71.9
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 2.5e-13 78.6 69 69.6
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.3e-13 78.2 64 71.9
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.3e-13 77.8 68 66.2
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 4.3e-13 77.8 68 66.2
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.3e-13 77.0 63 69.8
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 7.3e-13 77.0 68 64.7
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 7.3e-13 77.0 68 64.7
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 7.3e-13 77.0 55 85.5
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.6e-12 75.9 65 64.6
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 2.8e-12 75.1 64 67.2
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.6e-12 74.7 64 68.8
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.6e-12 74.7 64 68.8
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 1.1e-11 73.2 71 69.0
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 6.8e-11 70.5 64 64.1
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.2e-10 69.7 69 65.2
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 3.4e-10 68.2 68 60.3
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 7.5e-10 67.0 64 62.5
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 9.9e-10 66.6 68 60.3
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 9.9e-10 66.6 68 60.3
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 1.3e-09 66.2 68 60.3
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 1.3e-09 66.2 65 60.0
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 1.3e-09 66.2 68 60.3
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 1.3e-09 66.2 68 60.3
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 1.3e-09 66.2 65 60.0
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.9e-09 65.1 63 61.9
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.7e-09 64.7 61 57.4
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.7e-09 64.7 61 57.4
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 4.9e-09 64.3 64 60.9
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 6.4e-09 63.9 64 60.9
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 6.4e-09 63.9 61 63.9
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.4e-09 63.9 63 60.3
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 1.1e-08 63.2 61 62.3
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.1e-08 63.2 61 65.6
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.4e-08 62.8 61 62.3
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.9e-08 62.4 61 60.7
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.4e-08 62.0 61 59.0
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 4.1e-08 61.2 64 59.4
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 4.1e-08 61.2 59 64.4
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 4.1e-08 61.2 62 54.8
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 7.1e-08 60.5 59 59.3
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 9.2e-08 60.1 64 59.4
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.2e-07 59.7 59 64.4
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.6e-07 59.3 59 62.7
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.6e-07 59.3 59 62.7
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.6e-07 59.3 61 57.4
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 2.1e-07 58.9 65 56.9
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 2.7e-07 58.5 61 57.4
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 2.7e-07 58.5 65 58.5
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.7e-07 58.5 61 57.4
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.7e-07 58.5 59 57.6
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.5e-07 58.2 59 57.6
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 4.6e-07 57.8 76 48.7
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 4.6e-07 57.8 59 61.0
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 6.0e-07 57.4 61 60.7
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 6.0e-07 57.4 59 57.6
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.0e-07 57.4 59 59.3
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 6.0e-07 57.4 61 57.4
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 7.8e-07 57.0 57 61.4
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.8e-07 57.0 59 59.3
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.0e-06 56.6 61 59.0
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.0e-06 56.6 61 59.0
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.0e-06 56.6 59 57.6
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 1.3e-06 56.2 61 54.1
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 1.3e-06 56.2 61 54.1
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.3e-06 56.2 57 64.9
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.7e-06 55.8 58 60.3
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.9e-06 54.7 64 53.1
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 3.9e-06 54.7 63 54.0
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 3.9e-06 54.7 61 54.1
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.9e-06 54.7 59 57.6
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.1e-06 54.3 59 55.9
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.6e-06 53.9 64 53.1


User provided reference genes

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