Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 2.2e-280 968.4 514 100.0
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.0e-217 759.2 522 80.5
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 8.5e-200 700.7 521 74.7
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.5e-196 689.9 524 76.1
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 9.5e-191 670.6 520 73.5
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 2.0e-188 662.9 521 72.2
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.5e-183 646.7 528 69.5
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.3e-173 612.8 529 67.1
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.1e-170 604.0 527 66.2
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 7.6e-164 581.3 557 62.7
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.7e-161 572.8 525 64.4
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.6e-158 563.5 525 63.2
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 5.2e-157 558.5 531 62.3
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 9.6e-151 537.7 553 58.8
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.5e-145 519.2 554 55.2
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.0e-144 517.7 550 55.6
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.0e-144 516.2 547 57.8
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 5.6e-143 511.9 552 54.7
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 5.6e-143 511.9 552 54.7
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.6e-142 510.4 549 56.8
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 2.8e-142 509.6 553 56.8
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.4e-141 507.3 552 54.3
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 9.0e-141 504.6 552 56.5
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 9.9e-140 501.1 530 58.9
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 3.2e-138 496.1 564 57.1
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 4.2e-138 495.7 551 56.3
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 9.3e-138 494.6 531 58.0
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.2e-137 494.2 551 56.8
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.8e-136 490.3 556 57.2
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 3.9e-136 489.2 555 57.1
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 1.1e-135 487.6 557 53.1
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 3.3e-135 486.1 557 53.9
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 1.3e-134 484.2 551 54.1
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.8e-133 480.3 551 54.8
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 5.3e-133 478.8 556 55.4
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 7.6e-132 474.9 530 56.8
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 7.6e-132 474.9 569 50.8
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 1.0e-131 474.6 555 52.8
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 7.1e-130 468.4 552 51.6
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 2.1e-129 466.8 551 54.4
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 7.9e-129 464.9 551 53.9
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 3.0e-128 463.0 541 52.9
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.1e-127 461.1 533 55.3
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.5e-127 460.7 548 53.8
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.3e-127 459.5 551 52.6
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.6e-126 457.2 560 55.7
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.4e-125 453.4 543 51.0
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 5.3e-125 452.2 564 52.5
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 1.0e-123 448.0 524 53.6
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.2e-121 441.0 543 52.9
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.1e-121 440.3 548 53.6
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 9.7e-119 431.4 555 51.9
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.8e-118 429.9 625 47.8
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.8e-118 429.1 527 53.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 4.8e-118 429.1 541 51.9
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 1.4e-117 427.6 604 47.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 3.1e-117 426.4 537 51.0
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.1e-117 426.4 554 48.6
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 4.1e-117 426.0 537 51.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 4.1e-117 426.0 543 49.2
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.2e-116 424.5 530 52.5
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.0e-116 423.7 540 51.5
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.0e-115 421.4 544 49.8
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.3e-115 421.0 546 49.8
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.8e-115 419.5 554 51.1
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.2e-113 414.5 586 46.8
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.1e-113 413.7 524 51.7
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 4.3e-111 406.0 534 52.6
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 7.4e-111 405.2 515 49.1
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 2.2e-110 403.7 537 46.6
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.2e-110 401.7 544 50.2
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.4e-109 401.0 554 48.0
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 9.1e-109 398.3 541 49.5
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.5e-108 396.0 548 48.5
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 7.7e-108 395.2 538 50.7
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.3e-107 394.4 538 50.6
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.7e-107 394.0 528 50.4
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.7e-107 394.0 553 46.5
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 3.8e-107 392.9 558 46.2
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 5.0e-107 392.5 552 49.1
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.0e-107 392.5 544 49.4
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 5.5e-106 389.0 544 50.2
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 9.4e-106 388.3 539 49.9
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.1e-105 387.1 542 48.7
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 2.7e-105 386.7 541 48.8
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 3.6e-105 386.3 537 46.9
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.4e-104 384.4 552 46.2
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.0e-104 383.3 538 46.8
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 8.8e-104 381.7 537 47.9
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.0e-103 380.6 539 49.2
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.4e-103 379.4 537 48.4
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 2.8e-102 376.7 507 49.7
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 3.5e-100 369.8 536 48.3
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.7e-99 367.5 533 48.6
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 6.5e-99 365.5 539 48.2
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 4.2e-98 362.8 533 46.3
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.1e-95 354.8 541 44.4
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.2e-94 350.5 523 45.9
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.8e-94 350.1 563 45.6
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 8.2e-94 348.6 540 47.0
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 8.2e-94 348.6 540 47.0
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.1e-93 348.2 564 43.6
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.4e-93 347.8 541 46.6
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.8e-93 347.4 559 47.4
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 4.1e-93 346.3 425 51.1
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 2.0e-92 344.0 472 47.2
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.2e-89 334.7 521 43.2
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.8e-88 330.9 731 37.6
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 2.3e-88 330.5 561 41.2
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 3.5e-84 316.6 560 43.6
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 5.7e-79 299.3 582 39.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.6e-73 281.2 516 42.1
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 2.3e-72 277.3 373 46.6
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 4.4e-71 273.1 296 54.1
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 6.4e-70 269.2 532 40.6
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.8e-69 267.7 526 41.3
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.8e-69 267.7 526 41.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 4.7e-65 253.1 417 43.6
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 6.2e-65 252.7 298 53.7
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 3.4e-63 246.9 320 49.1
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-59 235.0 413 43.1
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 7.3e-58 229.2 596 32.7
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 5.2e-56 223.0 585 34.0
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 2.0e-55 221.1 251 59.0
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.0e-51 208.8 422 37.9
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.6e-41 173.7 256 46.9
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 2.6e-39 167.5 229 44.5
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.4e-39 166.8 193 48.2
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.9e-39 165.6 302 39.4
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.4e-38 162.5 196 51.5
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 7.1e-37 159.5 719 28.5
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.0e-35 154.1 156 56.4
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 3.9e-35 153.7 522 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.5e-34 151.8 548 30.7
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.2e-29 133.7 119 59.7
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.6e-28 131.7 466 30.0
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 6.4e-22 109.8 217 40.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.1e-19 100.1 95 53.7
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 2.5e-18 97.8 178 37.1
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.8e-15 86.7 113 45.1
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.2e-14 84.7 135 43.0
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 3.8e-14 84.0 132 45.5
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 4.2e-13 80.5 368 29.3
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.1e-12 78.2 96 50.0
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.5e-12 77.4 116 48.3
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.8e-11 75.1 102 42.2
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.0e-11 74.3 531 25.4
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 4.3e-10 70.5 247 30.4
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.9e-08 63.2 162 35.8


User provided reference genes

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