Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0010481 Lotus japonicus HOM05D007678 ORTHO05D009658 1.1e-115 420.2 222 100.0
Psat3g196520 Pisum sativum HOM05D007678 ORTHO05D009658 5.2e-97 358.2 214 86.0
Ca_04109_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 1.2e-96 357.1 210 87.6
Ca_04118_v3 Cicer arietinum L. HOM05D007678 ORTHO05D009658 1.2e-96 357.1 210 87.6
Medtr7g009670 Medicago truncatula HOM05D007678 ORTHO05D009658 6.4e-95 351.3 212 84.9
Glyma.09G240200 Glycine max HOM05D007678 ORTHO05D009658 4.3e-91 338.6 216 83.3
Lalb_Chr17g0337231 Lupinus albus HOM05D007678 ORTHO05D009658 1.2e-88 330.5 214 79.9
Prupe.2G048500 Prunus persica HOM05D007678 ORTHO05D009658 8.6e-84 314.3 210 76.7
QL04p021923 Quercus lobata HOM05D007678 ORTHO05D009658 1.9e-83 313.2 210 78.1
Haze_02966 Corylus avellana HOM05D007678 ORTHO05D009658 3.3e-83 312.4 231 72.7
Atru.chr2.1713_Atru.chr2.1714 Acer truncatum HOM05D007678 ORTHO05D009658 6.2e-82 308.1 214 74.3
MD02G1272300 Malus domestica HOM05D007678 ORTHO05D009658 2.3e-81 306.2 212 73.1
FvH4_7g04260 Fragaria vesca HOM05D007678 ORTHO05D009658 5.8e-80 301.6 208 75.0
RcHm_v2.0_Chr1g0328821 Rosa chinensis HOM05D007678 ORTHO05D009658 1.7e-79 300.1 207 74.4
FAN10G0661 Fragaria x ananassa HOM05D007678 ORTHO05D009658 2.2e-79 299.7 208 74.0
Dinv31528 Davidia involucrata HOM05D007678 ORTHO05D009658 4.1e-78 295.4 214 72.0
Potri.001G033500 Populus trichocarpa HOM05D007678 ORTHO05D009658 5.4e-78 295.0 209 74.2
arahy.Tifrunner.gnm1.ann1.EB95VJ Arachis hypogaea HOM05D007678 ORTHO05D009658 9.2e-78 294.3 220 73.6
Actinidia01693 Actinidia chinensis HOM05D007678 ORTHO05D009658 3.5e-77 292.4 214 72.4
Duzib106G1843 Durio zibethinus HOM05D007678 ORTHO05D009658 3.3e-75 285.8 211 71.6
TAR623G0324 Trochodendron aralioides HOM05D007678 ORTHO05D009658 4.3e-75 285.4 214 69.2
Thecc.10G137600 Theobroma cacao HOM05D007678 ORTHO05D009658 9.5e-75 284.3 211 68.7
TWI38G1059 Tripterygium wilfordii HOM05D007678 ORTHO05D009658 6.2e-74 281.6 211 70.1
Nn7g37012 Nelumbo nucifera HOM05D007678 ORTHO05D009658 2.3e-73 279.6 213 65.7
Manes.04G155050 Manihot esculenta HOM05D007678 ORTHO05D009658 5.2e-73 278.5 250 62.8
QL04p022035 Quercus lobata HOM05D007678 ORTHO05D009658 3.4e-72 275.8 194 73.7
Sed0019894 Sechium edule HOM05D000001 ORTHO05D000003 5.8e-72 275.0 208 70.2
ECA248G0545 Erigeron canadensis HOM05D007678 ORTHO05D009658 6.4e-71 271.6 207 68.1
Gohir.D10G198600 Gossypium hirsutum HOM05D007678 ORTHO05D009658 5.4e-70 268.5 204 68.1
Glyma.18G256300 Glycine max HOM05D007678 ORTHO05D009658 2.1e-69 266.5 212 73.1
Sabra01G0023800 Salix brachista HOM05D007678 ORTHO05D009658 2.7e-69 266.2 254 60.2
Gorai.011G222500 Gossypium raimondii HOM05D007678 ORTHO05D009658 4.6e-69 265.4 204 67.2
Oeu044217.3 Olea europaea HOM05D007678 ORTHO05D009658 7.8e-69 264.6 245 59.6
Solyc10g081280.2 Solanum lycopersicum HOM05D007678 ORTHO05D009658 7.8e-69 264.6 208 66.8
PGSC0003DMG401028118 Solanum tuberosum HOM05D007678 ORTHO05D009658 7.8e-69 264.6 208 66.3
MELO3C034052.2 Cucumis melo HOM05D007678 ORTHO05D009658 1.3e-68 263.8 208 66.8
Sopen10g031780 Solanum pennellii HOM05D007678 ORTHO05D009658 1.7e-68 263.5 208 65.4
SalBow6G2419 Salvia bowleyana HOM05D007678 ORTHO05D009658 2.3e-68 263.1 211 64.0
HanXRQChr12g0376111 Helianthus annuus HOM05D007678 ORTHO05D009658 3.9e-68 262.3 212 67.5
COL.COLO4_04659 Corchorus olitorius HOM05D007678 ORTHO05D009658 7.3e-67 258.1 231 61.5
VMungo1383G0210 Vigna mungo HOM05D000430 ORTHO05D009658 3.6e-66 255.8 157 84.1
FAN06G1516 Fragaria x ananassa HOM05D007678 ORTHO05D009658 8.1e-66 254.6 237 62.4
PGR031G1114 Punica granatum HOM05D007678 ORTHO05D009658 2.4e-65 253.1 213 62.4
Ah.12g064780 Amaranthus hybridus HOM05D007678 ORTHO05D009658 4.0e-65 252.3 210 62.4
Migut.J01589 Erythranthe guttata HOM05D007678 ORTHO05D009658 4.0e-65 252.3 208 63.5
Eucgr.G03196 Eucalyptus grandis HOM05D007678 ORTHO05D009658 6.9e-65 251.5 213 63.4
MBI13_g30074_MAGBIO Magnolia biondii HOM05D007678 ORTHO05D009658 1.5e-64 250.4 211 64.5
DCAR_001914 Daucus carota HOM05D007678 ORTHO05D009658 5.8e-64 248.4 203 65.0
ATR0307G037 Amborella trichopoda HOM05D007678 ORTHO05D009658 1.7e-63 246.9 211 59.7
Lsat_1_v5_gn_7_114920 Lactuca sativa HOM05D007678 ORTHO05D009658 3.8e-63 245.7 226 60.2
unitig_37.g12769 Utricularia gibba HOM05D007678 ORTHO05D009658 1.9e-62 243.4 210 59.0
Gohir.A10G190900 Gossypium hirsutum HOM05D007678 ORTHO05D009658 9.3e-62 241.1 187 66.8
Sc10g0003150 Simmondsia chinensis HOM05D007678 ORTHO05D009658 1.6e-61 240.4 214 59.8
Peaxi162Scf00153g00057 Petunia axillaris HOM05D007678 ORTHO05D009658 7.8e-61 238.0 189 66.7
CiPaw.14G011000 Carya illinoinensis HOM05D007678 ORTHO05D009658 2.3e-60 236.5 183 69.9
Nitab4.5_0008005g0010 Nicotiana tabacum HOM05D007678 ORTHO05D009658 6.6e-60 235.0 182 67.0
vmacro20847 Vaccinium macrocarpon HOM05D007678 ORTHO05D009658 6.6e-60 235.0 238 57.6
CAN.G128.118 Capsicum annuum HOM05D001269 ORTHO05D001083 1.3e-58 230.7 187 64.2
HPP92_018248 Vanilla planifolia HOM05D007678 ORTHO05D009658 2.1e-58 229.9 199 57.3
Zm00001eb303400 Zea mays HOM05D007678 ORTHO05D009658 8.1e-58 228.0 208 58.2
EL10Ac2g02701 Beta vulgaris HOM05D007678 ORTHO05D009658 1.1e-57 227.6 206 60.7
Hund13420 Selenicereus undatus HOM05D007678 ORTHO05D009658 1.4e-57 227.3 215 58.6
CDE09G0612 Ceratophyllum demersum HOM05D007678 ORTHO05D009658 1.2e-56 224.2 183 63.9
Nitab4.5_0000062g0570 Nicotiana tabacum HOM05D007678 ORTHO05D009658 3.4e-56 222.6 189 62.4
CsaV3_5G029470 Cucumis sativus L. HOM05D007678 ORTHO05D000003 9.9e-56 221.1 167 69.5
arahy.Tifrunner.gnm1.ann1.L3S1G4 Arachis hypogaea HOM05D007678 ORTHO05D009658 1.7e-55 220.3 212 61.8
AUR62031676 Chenopodium quinoa HOM05D007678 ORTHO05D009658 3.5e-53 212.6 166 65.1
TPR.G4277 Trifolium pratense HOM05D007678 ORTHO05D009658 4.6e-53 212.2 120 90.8
Phvul.008G043200 Phaseolus vulgaris HOM05D007678 ORTHO05D009658 4.0e-49 199.1 124 84.7
Rhsim01G0121700 Rhododendron simsii HOM05D007678 ORTHO05D009658 1.3e-47 194.1 143 69.2
Mapoly0003s0067 Marchantia polymorpha HOM05D007678 ORTHO05D009658 5.5e-46 188.7 205 44.9
CBR_g30334 Chara braunii HOM05D007678 ORTHO05D009658 1.2e-45 187.6 212 46.7
Pp3c18_7980 Physcomitrium patens HOM05D007678 ORTHO05D009658 3.3e-43 179.5 206 43.7
CANSAT56G0191 Cannabis sativa HOM05D007678 ORTHO05D009658 2.8e-42 176.4 126 72.2
SMO174G0167 Selaginella moellendorffii HOM05D007678 ORTHO05D009658 5.3e-41 172.2 183 47.0
Cc06_g20600 Coffea canephora HOM05D007678 ORTHO05D009658 1.0e-39 167.9 137 65.7
QL04p021970 Quercus lobata HOM05D007678 ORTHO05D009658 1.1e-38 164.5 108 77.8
TPR.G8973 Trifolium pratense HOM05D007678 ORTHO05D009658 1.9e-38 163.7 94 86.2
Cpa.g.sc33.162 Carica papaya HOM05D007678 ORTHO05D009658 1.3e-34 151.0 106 75.5
arahy.Tifrunner.gnm1.ann1.1DGF2A Arachis hypogaea HOM05D007678 ORTHO05D009658 2.1e-34 150.2 94 76.6
Lsat_1_v5_gn_5_155661 Lactuca sativa HOM05D007678 ORTHO05D009658 3.6e-29 132.9 203 42.4
arahy.Tifrunner.gnm1.ann1.6E2HM0 Arachis hypogaea HOM05D007678 ORTHO05D009658 1.5e-27 127.5 78 80.8
PRCOL_00006709 Prasinoderma coloniale HOM05D007678 ORTHO05D009658 4.2e-22 109.4 172 34.3
Cc06_g20610 Coffea canephora HOM05D007678 ORTHO05D009658 1.2e-21 107.8 75 65.3
MCO01G505 Micromonas commoda HOM05D007678 ORTHO05D009658 2.1e-21 107.1 187 29.4
GSVIVG01012452001 Vitis vinifera HOM05D007678 ORTHO05D009658 1.0e-20 104.8 80 67.5
arahy.Tifrunner.gnm1.ann1.78M82M Arachis hypogaea HOM05D007678 ORTHO05D009658 5.7e-19 99.0 64 78.1
CSS0047660 Camellia sinensis var. sinensis HOM05D007678 ORTHO05D009658 2.0e-16 90.5 60 75.0
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 3.6e-13 79.7 46 84.8
QL04p021975 Quercus lobata HOM05D007678 ORTHO05D009658 3.6e-13 79.7 56 71.4
arahy.Tifrunner.gnm1.ann1.NH3ZAS Arachis hypogaea HOM05D007678 ORTHO05D009658 4.7e-13 79.3 53 81.1
arahy.Tifrunner.gnm1.ann1.BX3238 Arachis hypogaea HOM05D007678 ORTHO05D009658 6.7e-12 75.5 72 62.5
FAN03G1326 Fragaria x ananassa HOM05D001392 ORTHO05D006407 9.7e-11 71.6 51 74.5
arahy.Tifrunner.gnm1.ann1.MMNX5U Arachis hypogaea HOM05D000747 ORTHO05D009658 1.4e-09 67.8 52 73.1
QL02p047964 Quercus lobata HOM05D007678 ORTHO05D009658 1.8e-09 67.4 54 66.7
Os07g0222900 Oryza sativa ssp. japonica HOM05D007678 ORTHO05D009658 7.0e-09 65.5 65 52.3
TPR.G4281 Trifolium pratense HOM05D007678 ORTHO05D009658 2.0e-08 63.9 36 86.1
QL02p047905 Quercus lobata HOM05D007678 ORTHO05D009658 5.0e-07 59.3 64 50.0


User provided reference genes

Program Settings