Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.5e-147 526.2 261 100.0
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 3.0e-140 501.9 261 93.9
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 3.3e-139 498.4 261 93.5
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 4.3e-139 498.0 261 93.1
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 5.6e-139 497.7 261 92.7
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 1.6e-138 496.1 261 92.7
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 1.6e-138 496.1 261 92.7
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.6e-138 496.1 261 92.3
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 2.1e-138 495.7 261 92.0
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 2.8e-138 495.4 261 92.0
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 3.6e-138 495.0 261 92.0
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 4.7e-138 494.6 261 92.7
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.8e-137 492.7 261 95.8
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 4.0e-137 491.5 261 91.6
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 2.0e-136 489.2 261 92.0
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 91.2
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 92.0
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 88.9
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 89.7
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 88.5
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 89.3
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 89.3
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 87.7
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 88.9
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 88.9
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 88.9
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 88.5
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 87.7
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 88.9
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 6.6e-132 474.2 260 88.5
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 88.1
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 88.1
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 88.5
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 87.7
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 1.5e-131 473.0 260 88.5
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 88.5
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 88.1
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 88.1
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 87.7
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 87.7
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 88.1
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 3.3e-131 471.9 260 87.3
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 87.7
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.9
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 5.6e-131 471.1 258 88.8
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 87.0
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 87.7
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 87.4
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 87.7
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 87.7
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 87.4
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 86.2
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 86.6
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 87.4
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.5
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 87.4
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 87.0
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 87.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 87.0
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 4.7e-130 468.0 261 87.4
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 87.0
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 86.2
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 85.4
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 87.7
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 87.0
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 87.0
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 85.8
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 85.8
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 86.2
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.4e-129 466.5 264 87.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 86.2
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 85.8
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 85.8
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 2.3e-129 465.7 260 85.8
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 85.4
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 85.4
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 85.4
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 87.0
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.1e-129 465.3 261 85.8
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 4.0e-129 464.9 261 86.2
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 86.2
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 5.2e-129 464.5 265 85.3
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 85.8
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 85.8
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 86.2
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 8.9e-129 463.8 260 85.8
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 85.4
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 85.4
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 2.6e-128 462.2 260 85.4
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 85.8
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 85.8
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 4.4e-128 461.5 276 84.8
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 85.4
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 85.8
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 85.8
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 85.8
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 85.8
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 2.2e-127 459.1 260 85.8
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 2.2e-127 459.1 260 85.8
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 85.1
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 84.7
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 83.9
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 85.1
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 84.3
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 85.1
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 8.4e-127 457.2 260 85.4
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 83.5
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 1.1e-126 456.8 269 83.3
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.9e-126 456.1 259 85.7
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.9e-126 456.1 259 85.7
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 2.4e-126 455.7 259 85.3
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 4.1e-126 454.9 285 80.0
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.2e-125 453.4 256 85.5
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 83.1
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 84.3
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 83.1
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 6.0e-125 451.1 261 84.3
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 83.9
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.3e-124 449.1 261 84.3
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 2.3e-124 449.1 261 83.1
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.9e-124 448.4 261 84.3
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 83.5
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.5e-123 445.7 277 79.4
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 4.3e-123 444.9 261 82.4
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 81.6
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 2.1e-122 442.6 260 83.5
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.4e-121 439.1 256 83.2
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 3.1e-121 438.7 261 80.8
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 6.4e-119 431.0 240 86.7
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 2.4e-118 429.1 261 80.8
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.8e-117 424.1 241 84.2
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.3e-116 422.5 241 83.8
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 5.3e-113 411.4 261 78.2
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 5.3e-113 411.4 261 78.2
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 7.6e-112 407.5 261 72.8
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 8.4e-111 404.1 261 78.5
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.9e-110 402.9 266 76.7
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 1.9e-110 402.9 261 75.1
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 5.4e-110 401.4 261 77.8
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 7.1e-110 401.0 261 74.7
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 1.7e-108 396.4 213 88.7
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.6e-106 388.7 309 68.6
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.1e-105 387.1 261 75.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.4e-105 386.7 222 84.2
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-103 380.2 337 59.6
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.9e-102 376.3 254 74.4
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.9e-102 376.3 201 88.1
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 3.5e-101 372.1 240 76.2
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 6.7e-100 367.9 195 88.7
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 6.2e-98 361.3 200 86.0
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 5.1e-92 341.7 257 70.8
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 5.3e-89 331.6 260 61.9
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.2e-86 321.2 177 84.7
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.3e-82 310.5 161 91.3
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 5.0e-71 271.9 229 59.0
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 9.4e-70 267.7 240 61.7
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.1e-57 226.1 113 94.7
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 4.5e-56 222.2 142 77.5
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 5.9e-56 221.9 143 76.9
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.5e-54 215.3 135 78.5
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 1.4e-49 200.7 98 94.9
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 1.8e-41 173.7 109 76.1
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 4.1e-41 172.6 270 43.7
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 9.2e-41 171.4 196 50.5
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 4.5e-40 169.1 108 77.8
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 5.6e-38 162.2 135 62.2
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 3.6e-37 159.5 92 83.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 2.2e-34 150.2 100 75.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 6.4e-34 148.7 197 46.2
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 5.2e-28 129.0 81 76.5
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 4.4e-27 125.9 91 65.9
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.6e-23 112.1 111 55.9
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 3.7e-18 96.3 64 73.4
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 8.9e-12 75.1 81 50.6
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 6.4e-10 68.9 56 64.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 1.1e-09 68.2 44 79.5
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 2.7e-08 63.5 62 56.5
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 6.0e-08 62.4 52 65.4
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.0e-07 61.6 59 52.5
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.9e-06 57.4 34 73.5
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 2.5e-06 57.0 52 53.8
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 4.3e-06 56.2 36 72.2


User provided reference genes

Program Settings