Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 2206.8 1140 100.0
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1693.7 1146 77.1
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1692.2 1143 78.1
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1670.2 1148 75.8
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1669.1 1147 75.8
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1663.3 1144 74.9
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1653.3 1135 75.2
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1637.9 1139 75.7
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1582.8 1146 72.4
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1513.0 1137 68.8
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1499.2 1135 68.5
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 0.0e+00 1462.2 1089 71.0
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1235.7 1149 58.3
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1231.5 1161 57.5
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1221.5 1163 56.7
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1221.5 1231 55.2
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1219.1 1160 57.4
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1196.8 1167 57.2
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1189.1 1159 56.2
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1181.8 1152 55.6
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1179.5 1165 56.1
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1165.6 1153 55.7
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1156.7 1163 56.2
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1151.7 1152 54.3
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1149.4 1151 54.6
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1149.0 1152 55.1
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1146.0 1156 54.0
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1144.0 1161 53.9
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1137.1 1150 54.2
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1126.3 1153 53.2
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1122.1 1167 53.9
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1112.1 1152 53.0
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1107.8 1166 52.4
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1104.4 1159 52.8
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1095.1 1149 53.3
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1081.2 1166 51.4
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1077.0 1156 51.4
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.9e-308 1062.8 1128 52.0
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 1.4e-306 1056.6 1139 50.5
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 2.0e-305 1052.7 1213 49.0
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 3.5e-302 1042.0 1101 52.3
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 7.7e-302 1040.8 1149 48.8
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 1.7e-301 1039.6 1161 50.3
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.7e-301 1039.6 1162 49.1
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 3.6e-299 1031.9 1149 49.1
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.8e-298 1029.6 1149 49.0
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 2.7e-294 1015.8 1122 49.8
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 8.6e-293 1010.7 1150 49.9
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.2e-291 1006.9 1069 52.4
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 2.8e-291 1005.7 1103 50.0
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.8e-287 993.0 1159 49.4
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 1.3e-285 986.9 1154 48.4
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 1.2e-283 980.3 1153 48.0
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 8.0e-283 977.6 1155 47.8
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 1.2e-281 973.8 1233 46.9
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 9.8e-281 970.7 1159 47.5
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 5.4e-279 964.9 1153 47.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.7e-278 962.6 1162 47.6
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 4.4e-273 945.3 1151 46.3
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.3e-272 943.7 1153 46.5
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 1.7e-272 943.3 1148 46.8
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 5.1e-269 931.8 1129 46.8
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.5e-268 930.2 1158 46.1
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 5.6e-268 928.3 1143 47.2
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 9.5e-268 927.5 1157 46.1
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.2e-267 927.2 1152 45.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.2e-266 921.8 1044 50.6
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 7.5e-265 917.9 1140 45.7
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 1.7e-264 916.8 1153 46.2
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.9e-263 913.3 1144 46.2
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 2.4e-263 912.9 1153 45.9
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 4.1e-263 912.1 1154 46.2
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 1.2e-262 910.6 1154 45.9
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 3.9e-261 905.6 1145 46.0
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 8.6e-261 904.4 1143 46.3
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 8.1e-259 897.9 1152 44.4
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.6e-257 891.3 1145 44.0
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 5.1e-253 878.6 1101 47.1
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 2.5e-252 876.3 1007 48.1
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 2.4e-250 869.8 1181 42.8
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 3.1e-250 869.4 1034 46.4
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.6e-249 866.3 1144 44.0
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.2e-248 863.2 1136 44.3
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.4e-239 833.2 959 48.2
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.3e-237 827.4 1066 45.5
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 3.3e-236 822.8 1138 43.0
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.8e-229 800.4 1153 41.9
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 3.3e-228 796.2 1155 42.2
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.2e-225 787.7 1164 39.8
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.2e-224 783.5 950 46.5
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.2e-222 777.7 1142 40.5
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 3.0e-221 773.1 1069 42.8
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 3.2e-215 753.1 1147 40.2
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 5.7e-204 715.7 902 43.7
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 9.2e-162 575.5 1051 35.9
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 1.8e-133 481.5 1197 30.8
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 7.3e-127 459.5 1200 29.3
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 4.9e-123 446.8 648 41.4
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.8e-120 438.3 457 53.4
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 7.9e-113 412.9 694 38.5
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.9e-111 408.3 506 45.1
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.3e-103 380.6 437 50.6
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.4e-101 375.6 523 41.3
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.5e-99 366.7 436 46.6
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.3e-94 352.4 341 54.0
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 4.1e-93 347.4 1136 27.3
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 5.0e-91 340.5 447 46.1
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.0e-76 292.0 236 63.1
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 8.8e-72 276.6 1290 24.7
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.0e-64 251.1 197 66.5
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.8e-62 245.0 245 53.5
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 5.6e-58 230.7 315 42.2
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 9.8e-55 219.9 315 45.7
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 4.9e-54 217.6 154 68.8
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 2.0e-52 212.2 191 61.8
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 8.6e-51 206.8 251 49.4
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 3.1e-48 198.4 180 56.1
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 2.7e-44 185.3 138 70.3
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 6.6e-43 180.6 182 53.3
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.1e-40 171.8 251 41.8
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 4.9e-38 164.5 95 88.4
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.1e-37 163.3 159 50.3
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.4e-30 137.1 116 59.5
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 8.4e-30 137.1 143 52.4
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.9e-26 125.9 195 35.9
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 7.3e-26 124.0 94 72.3
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 9.6e-26 123.6 176 42.6
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.1e-25 122.5 113 53.1
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 8.1e-25 120.6 144 47.2
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 8.1e-25 120.6 144 47.2
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.1e-24 118.6 122 50.0
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 3.1e-24 118.6 96 64.6
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.4e-23 115.2 96 61.5
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.4e-23 115.2 96 61.5
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.4e-23 114.8 120 50.8
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 7.6e-23 114.0 348 27.0
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 4.6e-20 104.8 73 72.6
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 7.8e-20 104.0 59 84.7
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 7.3e-18 97.4 174 35.1
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 3.6e-17 95.1 252 30.2
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 3.1e-16 92.0 79 63.3
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.5e-15 89.7 144 39.6
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 2.0e-15 89.4 126 42.9
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 2.9e-14 85.5 70 51.4
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 3.2e-13 82.0 90 43.3
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 4.6e-12 78.2 53 71.7
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 6.2e-09 67.8 79 41.8
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.4e-08 65.9 64 48.4
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 2.4e-08 65.9 76 50.0
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 5.3e-08 64.7 68 45.6


User provided reference genes

Program Settings