Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 3.2e-246 855.5 789 100.0
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 6.0e-136 489.2 634 71.0
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 1.9e-134 484.2 634 53.8
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 3.3e-134 483.4 634 70.2
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 2.1e-125 454.1 655 65.2
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 5.3e-124 449.5 638 67.7
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 2.6e-123 447.2 654 63.9
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 1.0e-119 435.3 643 67.7
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 3.0e-119 433.7 656 45.6
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 5.1e-119 433.0 640 67.7
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 1.1e-113 415.2 630 67.9
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 1.5e-110 404.8 643 64.9
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 3.5e-104 383.6 647 62.8
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 1.8e-103 381.3 641 62.4
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 3.9e-103 380.2 639 62.8
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 1.1e-102 378.6 641 62.7
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 5.7e-102 376.3 639 62.9
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 3.1e-100 370.5 641 59.4
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 1.7e-98 364.8 631 61.8
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 1.7e-98 364.8 631 61.2
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 8.5e-98 362.5 635 61.1
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 2.5e-97 360.9 639 61.5
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 4.2e-97 360.1 639 44.8
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 7.2e-97 359.4 647 61.8
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.6e-96 357.1 641 60.8
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 4.6e-96 356.7 640 60.5
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 7.9e-96 355.9 643 60.8
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 1.0e-95 355.5 636 61.3
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.9e-95 353.6 641 60.5
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 4.3e-94 350.1 648 59.4
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 9.7e-94 349.0 636 61.0
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 4.8e-93 346.7 631 60.5
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 2.0e-91 341.3 640 46.7
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.9e-89 334.7 636 57.5
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 1.9e-89 334.7 642 60.3
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 7.2e-89 332.8 638 47.0
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 1.2e-88 332.0 649 56.7
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 1.6e-88 331.6 636 57.5
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 7.9e-88 329.3 636 57.5
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.3e-87 327.8 636 57.4
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 2.3e-87 327.8 641 48.4
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 3.0e-87 327.4 503 70.2
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 3.9e-87 327.0 635 61.1
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 6.7e-87 326.2 635 60.9
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 2.0e-86 324.7 634 59.3
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 2.6e-86 324.3 634 60.6
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 4.4e-86 323.6 644 58.2
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 5.7e-86 323.2 637 43.8
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 9.7e-86 322.4 641 60.7
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 1.7e-85 321.6 636 57.2
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 1.7e-85 321.6 636 42.5
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 6.3e-85 319.7 630 51.6
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 8.2e-85 319.3 638 42.6
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.4e-84 318.5 639 51.5
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 2.4e-84 317.8 643 58.3
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 3.1e-84 317.4 633 48.7
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 5.3e-84 316.6 643 57.7
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 7.0e-84 316.2 641 56.8
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 4.5e-83 313.5 634 60.3
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 2.2e-82 311.2 645 42.0
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 2.2e-82 311.2 417 80.8
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 2.5e-81 307.8 642 50.3
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 7.2e-81 306.2 634 59.5
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 2.3e-79 301.2 646 57.4
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 3.9e-79 300.4 441 50.8
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 3.9e-79 300.4 644 57.8
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 1.1e-78 298.9 643 57.1
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.7e-77 295.0 536 51.5
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 1.0e-74 285.8 628 57.6
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 2.2e-74 284.6 639 58.1
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 3.8e-74 283.9 633 55.8
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 6.5e-74 283.1 642 55.8
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 1.9e-73 281.6 631 47.1
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 2.5e-73 281.2 631 49.8
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 2.5e-73 281.2 631 56.7
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 4.2e-73 280.4 630 47.0
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 4.2e-73 280.4 627 57.7
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 2.7e-72 277.7 627 56.8
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 2.7e-72 277.7 636 57.4
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 2.0e-70 271.6 638 34.0
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 5.7e-70 270.0 630 48.6
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 7.5e-70 269.6 637 53.8
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 7.7e-67 259.6 429 73.7
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 2.9e-66 257.7 672 34.2
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 6.8e-63 246.5 556 57.4
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 1.5e-62 245.4 538 61.3
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 4.4e-62 243.8 539 42.3
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.7e-61 240.7 600 54.7
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 1.0e-58 232.6 632 54.4
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 1.3e-58 232.3 177 62.1
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 8.6e-58 229.6 553 42.3
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.0e-55 222.6 175 61.7
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 1.4e-55 222.2 175 64.6
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 1.7e-53 215.3 166 64.5
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.8e-53 214.5 172 57.0
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 7.0e-52 209.9 297 44.8
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 2.3e-50 204.9 633 51.8
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 2.8e-48 198.0 634 52.2
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 7.8e-43 179.9 167 54.5
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 3.9e-42 177.6 164 54.3
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 5.0e-42 177.2 161 56.5
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 4.3e-41 174.1 323 82.4
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 2.6e-38 164.9 310 36.1
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 5.8e-38 163.7 305 36.7
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 4.9e-37 160.6 167 50.9
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 4.9e-37 160.6 598 40.5
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 6.4e-37 160.2 263 37.6
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 1.0e-34 152.9 168 45.2
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 4.7e-32 144.1 175 44.6
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 5.4e-28 130.6 136 54.4
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 1.6e-24 119.0 81 71.6
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 4.7e-24 117.5 105 48.6
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 2.4e-23 115.2 81 71.6
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 1.9e-17 95.5 95 47.4
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 4.9e-13 80.9 253 27.7
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 2.4e-12 78.6 46 80.4
unitig_62.g23853 Utricularia gibba HOM05D006232 ORTHO05D007746 7.1e-12 77.0 215 29.3
unitig_64.g29781 Utricularia gibba HOM05D006232 ORTHO05D007746 7.1e-12 77.0 215 29.3
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 3.9e-10 71.2 39 84.6
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 3.9e-10 71.2 62 59.7
Sc02g0005770 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.1e-09 69.7 129 38.0
CAN.G691.7 Capsicum annuum HOM05D006232 ORTHO05D007746 1.5e-09 69.3 150 33.3


User provided reference genes

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