Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 5.5e-53 210.7 106 100.0
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 7.5e-50 200.3 106 96.2
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 3.1e-48 194.9 106 94.3
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 2.2e-33 145.6 106 71.7
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 3.7e-33 144.8 105 70.5
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 2.4e-32 142.1 106 66.0
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.2e-32 141.7 103 72.8
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.1e-32 141.4 103 70.9
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.6e-31 139.4 102 66.7
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 2.0e-31 139.0 103 69.9
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.0e-31 139.0 103 68.0
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 3.5e-31 138.3 103 68.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.5e-31 138.3 103 66.0
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 3.5e-31 138.3 102 67.6
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 4.6e-31 137.9 103 71.8
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 4.6e-31 137.9 107 68.2
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-30 136.7 101 70.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 1.0e-30 136.7 101 70.3
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 1.0e-30 136.7 101 70.3
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 1.0e-30 136.7 101 70.3
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 1.3e-30 136.3 106 67.9
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 2.3e-30 135.6 103 68.0
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 2.3e-30 135.6 103 68.9
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 3.9e-30 134.8 101 67.3
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 3.9e-30 134.8 102 66.7
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 5.0e-30 134.4 101 68.3
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 5.0e-30 134.4 103 68.9
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 8.6e-30 133.7 101 67.3
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 8.6e-30 133.7 100 67.0
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.1e-29 133.3 101 68.3
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.1e-29 133.3 101 68.3
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.1e-29 133.3 106 67.0
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.5e-29 132.9 104 66.3
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.5e-29 132.1 100 65.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.5e-29 132.1 100 65.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 3.3e-29 131.7 101 67.3
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.3e-29 131.7 100 66.0
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 4.3e-29 131.3 104 61.5
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 4.3e-29 131.3 103 63.1
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 5.6e-29 131.0 101 67.3
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 5.6e-29 131.0 101 67.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 5.6e-29 131.0 101 67.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 5.6e-29 131.0 101 67.3
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 7.3e-29 130.6 106 64.2
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 9.5e-29 130.2 101 67.3
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 9.5e-29 130.2 106 63.2
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 9.5e-29 130.2 101 67.3
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 9.5e-29 130.2 106 63.2
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 9.5e-29 130.2 106 63.2
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.2e-28 129.8 101 68.3
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.2e-28 129.8 101 68.3
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 1.2e-28 129.8 101 62.4
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.6e-28 129.4 103 64.1
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.6e-28 128.3 99 63.6
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 3.6e-28 128.3 102 63.7
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.7e-28 127.9 101 66.3
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 6.2e-28 127.5 103 66.0
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 8.0e-28 127.1 100 65.0
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.0e-27 126.7 99 63.6
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.0e-27 126.7 106 63.2
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.8e-27 125.9 100 61.0
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 2.3e-27 125.6 100 64.0
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.1e-27 125.2 95 67.4
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 5.2e-27 124.4 103 66.0
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 6.8e-27 124.0 105 61.0
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 6.8e-27 124.0 105 61.9
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.2e-26 123.2 104 61.5
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 2.6e-26 122.1 101 61.4
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 5.8e-26 120.9 95 65.3
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 5.8e-26 120.9 100 60.0
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 9.8e-26 120.2 93 66.7
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.3e-25 119.8 99 60.6
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.3e-25 119.8 106 59.4
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.7e-25 119.4 105 59.0
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 6.4e-25 117.5 101 61.4
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 8.3e-25 117.1 105 57.1
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.1e-24 116.7 93 64.5
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 1.4e-24 116.3 103 59.2
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.4e-24 116.3 103 60.2
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 4.1e-24 114.8 103 60.2
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 4.1e-24 114.8 103 60.2
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 9.2e-24 113.6 105 59.0
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 3.5e-23 111.7 89 69.7
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 4.6e-23 111.3 99 55.6
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.0e-22 110.2 90 66.7
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.3e-22 109.8 106 54.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.7e-22 109.4 90 65.6
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.0e-22 107.8 105 57.1
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 2.5e-21 105.5 95 60.0
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.2e-20 103.2 100 56.0
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.2e-20 103.2 94 59.6
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 3.6e-20 101.7 104 54.8
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 2.0e-18 95.9 98 54.1
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-17 92.8 79 62.0
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.7e-17 91.7 102 52.9
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 3.7e-17 91.7 91 52.7
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 5.4e-16 87.8 104 50.0
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 9.2e-16 87.0 83 55.4
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 9.2e-16 87.0 83 55.4
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 6.0e-15 84.3 86 58.1
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 7.8e-15 84.0 80 56.2
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.0e-14 83.6 86 58.1
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.0e-14 82.0 81 55.6
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.3e-13 78.6 88 52.3
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 7.3e-13 77.4 90 52.2
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.6e-12 76.3 81 49.4
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.8e-11 72.8 61 62.3
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 2.3e-11 72.4 91 50.5
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 3.1e-11 72.0 70 55.7
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 3.1e-11 72.0 90 51.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 4.0e-11 71.6 96 44.8
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 4.0e-11 71.6 95 46.3
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 5.2e-11 71.2 67 58.2
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 5.2e-11 71.2 61 62.3
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 6.8e-11 70.9 88 52.3
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.2e-10 70.1 70 54.3
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 2.6e-10 68.9 83 48.2
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 3.4e-10 68.6 61 57.4
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 4.4e-10 68.2 89 49.4
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 4.4e-10 68.2 78 51.3
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.3e-09 66.6 63 55.6
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.7e-09 66.2 61 54.1
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-09 66.2 79 50.6
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.7e-09 66.2 79 50.6
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.7e-09 66.2 61 55.7
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 1.7e-09 66.2 59 57.6
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.2e-09 65.9 72 50.0
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 2.2e-09 65.9 79 49.4
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 2.2e-09 65.9 94 42.6
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.2e-09 65.9 61 55.7
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.9e-09 65.5 59 59.3
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 3.8e-09 65.1 80 46.2
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 3.8e-09 65.1 80 46.2
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.8e-09 65.1 100 39.0
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 3.8e-09 65.1 47 68.1
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 3.8e-09 65.1 82 46.3
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 4.9e-09 64.7 80 53.8
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 6.4e-09 64.3 102 42.2
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.4e-08 63.2 71 49.3
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 1.9e-08 62.8 62 56.5
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.9e-08 62.8 78 47.4
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 2.4e-08 62.4 76 44.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.1e-08 61.6 59 59.3
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.1e-08 61.6 61 52.5
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 4.1e-08 61.6 46 63.0
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 7.1e-08 60.8 89 41.6
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 9.2e-08 60.5 61 50.8
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.2e-07 60.1 73 50.7
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.6e-07 59.7 91 44.0
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 2.7e-07 58.9 64 51.6
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 3.5e-07 58.5 106 36.8
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.6e-07 58.2 61 41.0
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 6.0e-07 57.8 73 52.1
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.0e-07 57.8 87 42.5
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.0e-07 57.8 87 42.5
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 6.0e-07 57.8 87 42.5
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.0e-06 57.0 46 60.9
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.3e-06 56.6 46 63.0
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.3e-06 56.6 70 45.7
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.7e-06 56.2 63 39.7
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.7e-06 56.2 61 45.9
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.3e-06 55.8 61 45.9
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.9e-06 55.1 77 41.6
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 5.1e-06 54.7 62 56.5
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 6.6e-06 54.3 73 49.3
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 8.6e-06 53.9 62 54.8


User provided reference genes

Program Settings